Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39709 | Canola | extracellular | 94.92 | 91.7 |
| AT2G39780.1 | Thale cress | extracellular | 84.77 | 83.78 |
| Solyc09g020110.2.1 | Tomato | plastid | 59.38 | 58.46 |
| KRH06524 | Soybean | extracellular | 60.55 | 57.62 |
| KRH47963 | Soybean | nucleus | 60.16 | 57.04 |
| Solyc06g082890.2.1 | Tomato | extracellular, plasma membrane | 57.03 | 52.9 |
| VIT_00s1339g00010.t01 | Wine grape | cytosol | 19.53 | 48.08 |
| GSMUA_Achr7P23750_001 | Banana | mitochondrion | 55.47 | 47.33 |
| TraesCS3A01G398300.1 | Wheat | endoplasmic reticulum, extracellular | 44.53 | 43.68 |
| OQU88033 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 46.09 | 42.75 |
| Os01t0897300-01 | Rice | extracellular | 45.7 | 42.09 |
| PGSC0003DMT400071177 | Potato | cytosol, nucleus, peroxisome | 39.06 | 41.84 |
| TraesCS3B01G430200.1 | Wheat | endoplasmic reticulum, extracellular, mitochondrion | 45.31 | 40.99 |
| TraesCS3B01G430300.1 | Wheat | unclear | 44.53 | 40.86 |
| TraesCS3A01G398200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 44.92 | 40.64 |
| TraesCS3D01G392200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 44.92 | 40.64 |
| TraesCS3D01G392300.1 | Wheat | extracellular | 44.14 | 40.21 |
| HORVU3Hr1G089550.5 | Barley | endoplasmic reticulum, extracellular, vacuole | 44.14 | 39.93 |
| KXG33898 | Sorghum | extracellular, plasma membrane | 46.09 | 38.69 |
| HORVU3Hr1G089580.5 | Barley | cytosol, extracellular | 45.31 | 37.78 |
| CDY33761 | Canola | extracellular | 33.2 | 37.44 |
| HORVU6Hr1G017960.3 | Barley | plastid | 25.0 | 36.78 |
| CDY33762 | Canola | peroxisome | 30.08 | 35.48 |
| CDX84041 | Canola | extracellular | 30.47 | 34.21 |
| CDX96863 | Canola | extracellular | 30.08 | 33.77 |
| CDY03023 | Canola | extracellular | 30.08 | 33.62 |
| CDY45186 | Canola | extracellular | 29.69 | 33.19 |
| CDY09344 | Canola | extracellular | 29.69 | 32.76 |
| CDY62181 | Canola | extracellular | 29.3 | 32.75 |
| Os01t0897200-01 | Rice | extracellular, vacuole | 36.33 | 32.75 |
| CDY40267 | Canola | extracellular | 27.34 | 31.53 |
| CDY20583 | Canola | extracellular | 27.34 | 31.53 |
| Zm00001d042511_P005 | Maize | golgi, mitochondrion, plasma membrane | 39.06 | 28.33 |
| CDY33763 | Canola | extracellular | 25.78 | 27.05 |
| CDX81620 | Canola | extracellular | 21.48 | 25.23 |
| OQU81225 | Sorghum | cytosol | 11.33 | 23.58 |
| Zm00001d042512_P006 | Maize | endoplasmic reticulum, extracellular, vacuole | 29.69 | 21.29 |
| CDX81621 | Canola | extracellular, nucleus, peroxisome | 31.25 | 12.5 |
Protein Annotations
| Gene3D:3.90.730.10 | MapMan:35.1 | GO:A0A078J9R8 | UniProt:A0A078J9R8 | EnsemblPlants:CDY60490 | ProteinID:CDY60490 |
| ProteinID:CDY60490.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0033897 | GO:GO:0090502 | EnsemblPlantsGene:GSBRNA2T00029702001 | InterPro:IPR036430 | PFAM:PF00445 | ScanProsite:PS00530 |
| PANTHER:PTHR11240 | PANTHER:PTHR11240:SF37 | InterPro:RNase_T2-like | InterPro:RNase_T2-like_sf | InterPro:RNase_T2_His_AS_1 | InterPro:Ribonuclease_T2_eukaryotic |
| SUPFAM:SSF55895 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EE65DB | SEG:seg | : |
Description
BnaC04g55920DBnaC04g55920D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078J9R8]
Coordinates
chrLK033886:+:41510..43800
Molecular Weight (calculated)
28802.0 Da
IEP (calculated)
7.316
GRAVY (calculated)
-0.339
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRRSLLLL LQVLFATVLS VSAYLPETGR LAGDDVVEVN RSQREFDYFA LSLQWPGTYC RGTRHCCSKN ACCRSSDTPT QFTIHGLWPD YNDGSWPSCC
101: YRSDFNEKEI STLVDGMEKY WPSLSCGSPS SCHGGKGSFW GHEKHGTCSS PVIRDEYSYF ITTLNLYFKH NVTDVLYQAG YVASNSEKYP LGGIVTAIQN
201: AFHITPEVVC KRDAIDEIRI CFYKDFKPRD CVGSKDMTSK KSCPKYVSLP EYTPLG
101: YRSDFNEKEI STLVDGMEKY WPSLSCGSPS SCHGGKGSFW GHEKHGTCSS PVIRDEYSYF ITTLNLYFKH NVTDVLYQAG YVASNSEKYP LGGIVTAIQN
201: AFHITPEVVC KRDAIDEIRI CFYKDFKPRD CVGSKDMTSK KSCPKYVSLP EYTPLG
001: MASRLCLLLL VACIAGAFAG DVIELNRSQR EFDYFALSLQ WPGTYCRGTR HCCSKNACCR GSDAPTQFTI HGLWPDYNDG SWPSCCYRSD FKEKEISTLM
101: DGLEKYWPSL SCGSPSSCNG GKGSFWGHEW EKHGTCSSPV FHDEYNYFLT TLNLYLKHNV TDVLYQAGYV ASNSEKYPLG GIVTAIQNAF HITPEVVCKR
201: DAIDEIRICF YKDFKPRDCV GSQDLTSRKS CPKYVSLPEY TPLDGEAMVL KMPTEREAL
101: DGLEKYWPSL SCGSPSSCNG GKGSFWGHEW EKHGTCSSPV FHDEYNYFLT TLNLYLKHNV TDVLYQAGYV ASNSEKYPLG GIVTAIQNAF HITPEVVCKR
201: DAIDEIRICF YKDFKPRDCV GSQDLTSRKS CPKYVSLPEY TPLDGEAMVL KMPTEREAL
Arabidopsis Description
RNS2Ribonuclease 2 [Source:UniProtKB/Swiss-Prot;Acc:P42814]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.