Factsheet for Solyc09g020110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g082890.2.1	Tomato	extracellular, plasma membrane	69.62	65.58
CDY60490	Canola	extracellular, plasma membrane, vacuole	58.46	59.38
AT2G39780.1	Thale cress	extracellular	57.69	57.92
KRH06524	Soybean	extracellular	58.08	56.13
Bra032671.1-P	Field mustard	extracellular	56.54	55.47
CDY39709	Canola	extracellular	56.54	55.47
KRH47963	Soybean	nucleus	56.54	54.44
VIT_00s1339g00010.t01	Wine grape	cytosol	21.15	52.88
GSMUA_Achr7P23750_001	Banana	mitochondrion	49.23	42.67
TraesCS3A01G398300.1	Wheat	endoplasmic reticulum, extracellular	41.54	41.38
Os01t0897300-01	Rice	extracellular	43.46	40.65
OQU88033	Sorghum	endoplasmic reticulum, extracellular, vacuole	42.69	40.22
TraesCS3B01G430300.1	Wheat	unclear	41.54	38.71
TraesCS3D01G392200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	41.15	37.81
HORVU3Hr1G089550.5	Barley	endoplasmic reticulum, extracellular, vacuole	41.15	37.81
TraesCS3D01G392300.1	Wheat	extracellular	40.77	37.72
TraesCS3B01G430200.1	Wheat	endoplasmic reticulum, extracellular, mitochondrion	40.77	37.46
TraesCS3A01G398200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	40.77	37.46
KXG33898	Sorghum	extracellular, plasma membrane	43.46	37.05
HORVU3Hr1G089580.5	Barley	cytosol, extracellular	41.54	35.18
HORVU6Hr1G017960.3	Barley	plastid	23.46	35.06
Solyc05g007950.2.1	Tomato	extracellular	29.23	33.04
Solyc05g013210.2.1	Tomato	cytosol	15.0	31.45
Os01t0897200-01	Rice	extracellular, vacuole	34.23	31.34
Solyc04g005640.2.1	Tomato	extracellular	27.69	30.0
Solyc05g007940.2.1	Tomato	extracellular	27.31	29.96
Zm00001d042511_P005	Maize	golgi, mitochondrion, plasma membrane	36.15	26.63
Solyc01g055200.1.1	Tomato	extracellular	20.38	23.98
OQU81225	Sorghum	cytosol	10.38	21.95
Zm00001d042512_P006	Maize	endoplasmic reticulum, extracellular, vacuole	26.15	19.05

Protein Annotations

Gene3D:3.90.730.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0033897	GO:GO:0090502	InterPro:IPR036430	UniProt:K4CSH2	PFAM:PF00445
PANTHER:PTHR11240	PANTHER:PTHR11240:SF37	InterPro:RNase_T2-like	InterPro:RNase_T2-like_sf	InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895
SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc09g020110.2	EnsemblPlants:Solyc09g020110.2.1	UniParc:UPI000276C4F0	SEG:seg	:

Description

No Description!

Coordinates

chr9:+:18416997..18428931

Molecular Weight (calculated)

29310.6 Da

IEP (calculated)

7.348

GRAVY (calculated)

-0.326

Length

260 amino acids

Sequence
(BLAST)

001: MSSPAIVNLW MLLVCCILIA VKGGWDEEVG LLRRGGKQRQ FDYFKLALQW PGTYCRKTRH CCSSNACCSR SNSPSVFTIH GLWTEYNDGT WPSCCSGRPF
101: DQKEISTLLE PMRKYWPSLS CSSPRSCHHK KGPFWGHEGE KHGTCAYPVV LDEYEFFLTT LNVYFKYNVT EVLFEAGYVP SDSEKYPLGG IISSIQNAFH
201: TTPELVCSGD ALEELRICFY KNFEPRDCAH DTSSRGSCPQ YVSLPAHGSW GFRSNTTAAS

Best Arabidopsis Sequence Match ( AT2G39780.1 )
(BLAST)

001: MASRLCLLLL VACIAGAFAG DVIELNRSQR EFDYFALSLQ WPGTYCRGTR HCCSKNACCR GSDAPTQFTI HGLWPDYNDG SWPSCCYRSD FKEKEISTLM
101: DGLEKYWPSL SCGSPSSCNG GKGSFWGHEW EKHGTCSSPV FHDEYNYFLT TLNLYLKHNV TDVLYQAGYV ASNSEKYPLG GIVTAIQNAF HITPEVVCKR
201: DAIDEIRICF YKDFKPRDCV GSQDLTSRKS CPKYVSLPEY TPLDGEAMVL KMPTEREAL

Arabidopsis Description

RNS2Ribonuclease 2 [Source:UniProtKB/Swiss-Prot;Acc:P42814]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.