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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 4
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:unclear
Any Predictor:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
unclear: 25769308
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3A01G398300.1 Wheat endoplasmic reticulum, extracellular 90.32 96.55
TraesCS3D01G392300.1 Wheat extracellular 96.42 95.73
HORVU3Hr1G089580.5 Barley cytosol, extracellular 92.83 84.36
OQU88033 Sorghum endoplasmic reticulum, extracellular, vacuole 72.04 72.83
HORVU6Hr1G017960.3 Barley plastid 36.92 59.2
Os01t0897200-01 Rice extracellular, vacuole 58.42 57.39
KRH47963 Soybean nucleus 45.52 47.04
AT2G39780.1 Thale cress extracellular 43.01 46.33
TraesCS3B01G430200.1 Wheat endoplasmic reticulum, extracellular, mitochondrion 46.95 46.29
GSMUA_Achr7P23750_001 Banana mitochondrion 49.46 46.0
KRH06524 Soybean extracellular 43.73 45.35
CDY60490 Canola extracellular, plasma membrane, vacuole 40.86 44.53
Bra032671.1-P Field mustard extracellular 41.58 43.77
CDY39709 Canola extracellular 41.58 43.77
Solyc09g020110.2.1 Tomato plastid 38.71 41.54
Solyc06g082890.2.1 Tomato extracellular, plasma membrane 40.5 40.94
Zm00001d042512_P006 Maize endoplasmic reticulum, extracellular, vacuole 52.33 40.9
TraesCS6B01G370600.1 Wheat extracellular 27.96 34.21
PGSC0003DMT400071177 Potato cytosol, nucleus, peroxisome 27.96 32.64
TraesCS2B01G182900.1 Wheat extracellular 27.6 32.08
VIT_00s1339g00010.t01 Wine grape cytosol 11.83 31.73
TraesCS2B01G278200.1 Wheat extracellular 25.81 31.3
TraesCS1B01G170200.1 Wheat extracellular 19.71 22.45
TraesCS1B01G170100.1 Wheat endoplasmic reticulum, extracellular 18.28 19.92
Protein Annotations
Gene3D:3.90.730.10MapMan:35.1GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003824
GO:GO:0004518GO:GO:0005488GO:GO:0016787GO:GO:0033897InterPro:IPR036430PFAM:PF00445
ScanProsite:PS00530ScanProsite:PS00531PANTHER:PTHR11240PANTHER:PTHR11240:SF37InterPro:RNase_T2-likeInterPro:RNase_T2-like_sf
InterPro:RNase_T2_His_AS_1InterPro:RNase_T2_His_AS_2InterPro:Ribonuclease_T2_eukaryoticSUPFAM:SSF55895SignalP:SignalP-noTMTMHMM:TMhelix
EnsemblPlantsGene:TraesCS3B01G430300EnsemblPlants:TraesCS3B01G430300.1TIGR:cd01061SEG:seg::
Description
No Description!
Coordinates
chr3B:+:669711018..669713385
Molecular Weight (calculated)
30831.7 Da
IEP (calculated)
6.751
GRAVY (calculated)
-0.082
Length
279 amino acids
Sequence
(BLAST)
001: MATATATCLL AVWALVAAGL FGTGLARASV APAAVGKEQR EFDYFALALQ WPGTICSSTR HCCAVNGCCR SEALHTFTIH GLWPDYDDGT WPSCCRHTSF
101: DMDKITPLKP TLDKYWPSLY CSTSSTCFSG RGPFWAHEWE KHGTCSSPVV HEELQYFTTA IDLYLKYNVT EMLATGDILV SNGKEYALSD VIDTIKHAFG
201: GSPQIICKKG SVEELRLCFT KDLKPRDCLT TSAMYKNLSK SKHCPRKISL PTYDPIVLTN STLEIVPEAS DNGLYFFTS
Best Arabidopsis Sequence Match ( AT2G39780.1 )
(BLAST)
001: MASRLCLLLL VACIAGAFAG DVIELNRSQR EFDYFALSLQ WPGTYCRGTR HCCSKNACCR GSDAPTQFTI HGLWPDYNDG SWPSCCYRSD FKEKEISTLM
101: DGLEKYWPSL SCGSPSSCNG GKGSFWGHEW EKHGTCSSPV FHDEYNYFLT TLNLYLKHNV TDVLYQAGYV ASNSEKYPLG GIVTAIQNAF HITPEVVCKR
201: DAIDEIRICF YKDFKPRDCV GSQDLTSRKS CPKYVSLPEY TPLDGEAMVL KMPTEREAL
Arabidopsis Description
RNS2Ribonuclease 2 [Source:UniProtKB/Swiss-Prot;Acc:P42814]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.