Factsheet for TraesCS6B01G370600.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G368500.1
TraesCS2B01G385700.2
TraesCS2D01G365300.2
TraesCS4A01G499900.1
TraesCS6A01G237600.1
TraesCS6B01G266100.1
TraesCS6D01G220300.1
TraesCS7A01G000300.1
TraesCS7A01G300700.1
TraesCS7D01G000200.1
TraesCS7D01G296400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02990.1	TraesCS4A01G499900.1	AT1G01010.1	21798944
AT2G02990.1	TraesCS7A01G000300.1	AT1G01010.1	21798944
AT2G02990.1	TraesCS7D01G000200.1	AT1G01010.1	21798944
AT2G02990.1	TraesCS2A01G368500.1	AT3G60600.1	21798944
AT2G02990.1	TraesCS2B01G385700.2	AT3G60600.1	21798944
AT2G02990.1	TraesCS2D01G365300.2	AT3G60600.1	21798944
AT2G02990.1	TraesCS6A01G237600.1	AT3G60600.1	21798944
AT2G02990.1	TraesCS6B01G266100.1	AT3G60600.1	21798944
AT2G02990.1	TraesCS6D01G220300.1	AT3G60600.1	21798944
AT2G02990.1	TraesCS7A01G300700.1	AT3G60600.1	21798944
AT2G02990.1	TraesCS7D01G296400.1	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G320200.1	Wheat	extracellular	96.93	96.93
TraesCS6A01G339600.1	Wheat	extracellular	96.49	96.49
HORVU0Hr1G017230.3	Barley	extracellular	89.47	89.08
HORVU6Hr1G081930.1	Barley	cytosol	28.95	86.84
TraesCS2B01G278200.1	Wheat	extracellular	84.21	83.48
EES15044	Sorghum	extracellular	78.07	79.11
Zm00001d032186_P001	Maize	extracellular	78.51	78.17
Os08t0434100-01	Rice	extracellular	75.0	74.67
HORVU6Hr1G081950.3	Barley	extracellular	65.35	73.4
GSMUA_Achr5P23330_001	Banana	extracellular	59.21	59.47
KRG89631	Soybean	endoplasmic reticulum, extracellular	58.33	58.59
KRH70736	Soybean	extracellular	58.33	58.59
CDY62181	Canola	extracellular	57.46	57.21
Bra026570.1-P	Field mustard	extracellular	57.46	57.21
GSMUA_Achr7P21030_001	Banana	extracellular	55.26	56.76
CDY09344	Canola	extracellular	57.46	56.47
AT2G02990.1	Thale cress	extracellular	56.14	55.65
KRH74869	Soybean	endoplasmic reticulum, extracellular, plasma membrane	57.89	55.46
Bra024795.1-P	Field mustard	extracellular	54.39	54.15
CDY03023	Canola	extracellular	54.39	54.15
CDY45186	Canola	extracellular	54.39	54.15
GSMUA_Achr4P00460_001	Banana	endoplasmic reticulum, extracellular, plastid	51.75	44.7
TraesCS2B01G182900.1	Wheat	extracellular	45.61	43.33
TraesCS1B01G170200.1	Wheat	extracellular	35.53	33.06
TraesCS3B01G430300.1	Wheat	unclear	34.21	27.96
TraesCS1B01G170100.1	Wheat	endoplasmic reticulum, extracellular	30.26	26.95
TraesCS3B01G430200.1	Wheat	endoplasmic reticulum, extracellular, mitochondrion	30.26	24.38

Protein Annotations

Gene3D:3.90.730.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0016787	GO:GO:0033897	InterPro:IPR036430	PFAM:PF00445
ScanProsite:PS00530	ScanProsite:PS00531	PFscan:PS51257	PANTHER:PTHR11240	PANTHER:PTHR11240:SF35	InterPro:RNase_T2-like
InterPro:RNase_T2-like_sf	InterPro:RNase_T2_His_AS_1	InterPro:RNase_T2_His_AS_2	InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895	SignalP:SignalP-noTM
EnsemblPlantsGene:TraesCS6B01G370600	EnsemblPlants:TraesCS6B01G370600.1	TIGR:cd01061	SEG:seg	:	:

Description

No Description!

Coordinates

chr6B:+:644382035..644383386

Molecular Weight (calculated)

25001.2 Da

IEP (calculated)

4.777

GRAVY (calculated)

-0.243

Length

228 amino acids

Sequence
(BLAST)

001: MMRSCLPLAL LVALSAVGCA AAQAADYDFF YLVLQWPGSY CDTKQSCCYP RSGKPAADFG IHGLWPNRDD GTYPQNCNPA NAFDPSKVSD LLSSLRTEWP
101: TLACPTSDGL QFWAHEWEKH GTCAQNLFNE HGYFQTALHL RDQLRVLDAL ASAGVSPDGG YYTLSAIKGA IQQGTGFEPF VECNRDESGN NQLYQLYFCV
201: DANASGFVQC PVQPGGRPCG NRIEFPTF

Best Arabidopsis Sequence Match ( AT2G02990.1 )
(BLAST)

001: MKILLASLCL ISLLVILPSV FSASSSSEDF DFFYFVQQWP GSYCDTQKKC CYPNSGKPAA DFGIHGLWPN YKDGTYPSNC DASKPFDSST ISDLLTSMKK
101: SWPTLACPSG SGEAFWEHEW EKHGTCSESV IDQHEYFQTA LNLKQKTNLL GALTKAGINP DGKSYSLESI RDSIKESIGF TPWVECNRDG SGNSQLYQVY
201: LCVDRSGSGL IECPVFPHGK CGAEIEFPSF

Arabidopsis Description

RNS1Ribonuclease 1 [Source:UniProtKB/Swiss-Prot;Acc:P42813]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.