Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P21030_001 | Banana | extracellular | 68.72 | 70.27 |
| KRH70736 | Soybean | extracellular | 65.64 | 65.64 |
| VIT_01s0010g01250.t01 | Wine grape | cytosol, nucleus, plastid | 37.89 | 64.66 |
| KRG89631 | Soybean | endoplasmic reticulum, extracellular | 63.88 | 63.88 |
| Bra024795.1-P | Field mustard | extracellular | 64.32 | 63.76 |
| CDY45186 | Canola | extracellular | 64.32 | 63.76 |
| VIT_01s0026g02520.t01 | Wine grape | extracellular | 63.44 | 63.72 |
| AT2G02990.1 | Thale cress | extracellular | 64.32 | 63.48 |
| Solyc05g007950.2.1 | Tomato | extracellular | 64.32 | 63.48 |
| CDY62181 | Canola | extracellular | 63.44 | 62.88 |
| Bra026570.1-P | Field mustard | extracellular | 63.44 | 62.88 |
| CDY03023 | Canola | extracellular | 63.44 | 62.88 |
| VIT_01s0010g00450.t01 | Wine grape | extracellular | 25.99 | 62.77 |
| EES15044 | Sorghum | extracellular | 62.11 | 62.67 |
| CDY09344 | Canola | extracellular | 63.44 | 62.07 |
| KRH74871 | Soybean | endoplasmic reticulum | 61.67 | 61.95 |
| KRH74869 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 64.76 | 61.76 |
| KRH70737 | Soybean | extracellular | 60.79 | 61.06 |
| TraesCS6D01G320200.1 | Wheat | extracellular | 60.79 | 60.53 |
| AT1G14220.1 | Thale cress | extracellular | 60.79 | 60.53 |
| TraesCS6A01G339600.1 | Wheat | extracellular | 60.35 | 60.09 |
| Zm00001d032186_P001 | Maize | extracellular | 60.35 | 59.83 |
| TraesCS6B01G370600.1 | Wheat | extracellular | 59.47 | 59.21 |
| Bra026846.1-P | Field mustard | extracellular | 59.03 | 59.03 |
| CDY33761 | Canola | extracellular | 59.03 | 59.03 |
| CDY20583 | Canola | extracellular | 57.71 | 59.01 |
| Bra012439.1-P | Field mustard | extracellular | 57.27 | 58.56 |
| CDY40267 | Canola | extracellular | 57.27 | 58.56 |
| AT1G26820.1 | Thale cress | extracellular | 56.39 | 57.66 |
| GSMUA_Achr4P00460_001 | Banana | endoplasmic reticulum, extracellular, plastid | 66.96 | 57.58 |
| CDX96863 | Canola | extracellular | 57.27 | 57.02 |
| CDX84041 | Canola | extracellular | 56.83 | 56.58 |
| TraesCS2B01G278200.1 | Wheat | extracellular | 57.27 | 56.52 |
| TraesCS2D01G260000.1 | Wheat | extracellular | 56.83 | 56.09 |
| HORVU0Hr1G017230.3 | Barley | extracellular | 56.39 | 55.9 |
| Os08t0434100-01 | Rice | extracellular | 56.39 | 55.9 |
| TraesCS2A01G264000.1 | Wheat | extracellular | 56.39 | 55.65 |
| Solyc05g007940.2.1 | Tomato | extracellular | 56.83 | 54.43 |
| HORVU6Hr1G081930.1 | Barley | cytosol | 18.06 | 53.95 |
| CDY33762 | Canola | peroxisome | 51.1 | 53.46 |
| Solyc05g013210.2.1 | Tomato | cytosol | 28.19 | 51.61 |
| Solyc04g005640.2.1 | Tomato | extracellular | 53.3 | 50.42 |
| KRG89632 | Soybean | extracellular | 51.98 | 49.58 |
| HORVU2Hr1G062880.3 | Barley | plastid | 57.27 | 49.43 |
| HORVU6Hr1G081950.3 | Barley | extracellular | 44.05 | 49.26 |
| PGSC0003DMT400007421 | Potato | cytosol | 47.14 | 49.08 |
| AT1G14210.1 | Thale cress | extracellular | 48.02 | 44.13 |
| CDY33763 | Canola | extracellular | 47.14 | 43.85 |
| Bra026847.1-P | Field mustard | extracellular | 46.7 | 43.44 |
| CDX81620 | Canola | extracellular | 38.77 | 40.37 |
| PGSC0003DMT400007343 | Potato | extracellular, mitochondrion, nucleus | 18.06 | 38.32 |
| GSMUA_Achr4P08950_001 | Banana | extracellular | 36.12 | 34.02 |
| GSMUA_Achr9P02260_001 | Banana | extracellular, plasma membrane | 30.84 | 28.0 |
| GSMUA_Achr7P23750_001 | Banana | mitochondrion | 34.36 | 26.0 |
| GSMUA_Achr9P07920_001 | Banana | plasma membrane | 27.31 | 23.57 |
| GSMUA_Achr9P07930_001 | Banana | extracellular, plastid, vacuole | 30.4 | 23.23 |
| GSMUA_Achr9P07950_001 | Banana | extracellular | 27.75 | 21.58 |
| CDX81621 | Canola | extracellular, nucleus, peroxisome | 57.71 | 20.47 |
| GSMUA_Achr9P07940_001 | Banana | mitochondrion | 29.07 | 20.12 |
Protein Annotations
| Gene3D:3.90.730.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0033897 | GO:GO:0090502 | EnsemblPlantsGene:GSMUA_Achr5G23330_001 | EnsemblPlants:GSMUA_Achr5P23330_001 | EnsemblPlants:GSMUA_Achr5T23330_001 |
| InterPro:IPR036430 | UniProt:M0T108 | PFAM:PF00445 | ScanProsite:PS00530 | ScanProsite:PS00531 | PANTHER:PTHR11240 |
| PANTHER:PTHR11240:SF35 | InterPro:RNase_T2-like | InterPro:RNase_T2-like_sf | InterPro:RNase_T2_His_AS_1 | InterPro:RNase_T2_His_AS_2 | InterPro:Ribonuclease_T2_eukaryotic |
| SUPFAM:SSF55895 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0002965585 | SEG:seg | : |
Description
Extracellular ribonuclease LE [Source:GMGC_GENE;Acc:GSMUA_Achr5G23330_001]
Coordinates
chr5:-:25085762..25086832
Molecular Weight (calculated)
25218.5 Da
IEP (calculated)
4.832
GRAVY (calculated)
-0.330
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRRNPPAVS LLLPLLAVAT TSLAQDFDFF YFVLQWPGSY CDTAKSCCYP TSGKPAADFG IHGLWPNYND GSYPSNCDPN NPYDASKVRD LLSTMRQKWP
101: TLACPSSDGT QFWTHEWEKH GTCSESVFDQ HGYFQAALKL KKQVDVLRIL QDAGIQPDGG DYSLKSVVSA ISDAIGYTPW IECNNDEGGN SQLYQVYLCV
201: DTSAAKLIEC PVLPRKRCGS EIEFPSF
101: TLACPSSDGT QFWTHEWEKH GTCSESVFDQ HGYFQAALKL KKQVDVLRIL QDAGIQPDGG DYSLKSVVSA ISDAIGYTPW IECNNDEGGN SQLYQVYLCV
201: DTSAAKLIEC PVLPRKRCGS EIEFPSF
001: MKILLASLCL ISLLVILPSV FSASSSSEDF DFFYFVQQWP GSYCDTQKKC CYPNSGKPAA DFGIHGLWPN YKDGTYPSNC DASKPFDSST ISDLLTSMKK
101: SWPTLACPSG SGEAFWEHEW EKHGTCSESV IDQHEYFQTA LNLKQKTNLL GALTKAGINP DGKSYSLESI RDSIKESIGF TPWVECNRDG SGNSQLYQVY
201: LCVDRSGSGL IECPVFPHGK CGAEIEFPSF
101: SWPTLACPSG SGEAFWEHEW EKHGTCSESV IDQHEYFQTA LNLKQKTNLL GALTKAGINP DGKSYSLESI RDSIKESIGF TPWVECNRDG SGNSQLYQVY
201: LCVDRSGSGL IECPVFPHGK CGAEIEFPSF
Arabidopsis Description
RNS1Ribonuclease 1 [Source:UniProtKB/Swiss-Prot;Acc:P42813]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.