Factsheet for PGSC0003DMT400007343

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
mitochondrion 2
plastid 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
MultiLoc:	mitochondrion
Plant-mPloc:	cytosol, extracellular, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g005640.2.1	Tomato	extracellular	85.98	38.33
VIT_01s0010g01250.t01	Wine grape	cytosol, nucleus, plastid	32.71	26.32
PGSC0003DMT400007421	Potato	cytosol	45.79	22.48
VIT_01s0026g02520.t01	Wine grape	extracellular	39.25	18.58
GSMUA_Achr7P21030_001	Banana	extracellular	38.32	18.47
GSMUA_Achr5P23330_001	Banana	extracellular	38.32	18.06
KRG89632	Soybean	extracellular	37.38	16.81
AT1G14210.1	Thale cress	extracellular	36.45	15.79
GSMUA_Achr4P00460_001	Banana	endoplasmic reticulum, extracellular, plastid	38.32	15.53
Bra026847.1-P	Field mustard	extracellular	33.64	14.75
CDY33763	Canola	extracellular	33.64	14.75
CDX81620	Canola	extracellular	29.91	14.68
PGSC0003DMT400068755	Potato	extracellular	18.69	9.26
PGSC0003DMT400071177	Potato	cytosol, nucleus, peroxisome	19.63	8.79
VIT_01s0010g00450.t01	Wine grape	extracellular	3.74	4.26

Protein Annotations

Gene3D:3.90.730.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0033897	GO:GO:0090502	InterPro:IPR036430	UniProt:M0ZSU2	PFAM:PF00445
EnsemblPlantsGene:PGSC0003DMG400002825	PGSC:PGSC0003DMG400002825	EnsemblPlants:PGSC0003DMT400007343	PANTHER:PTHR11240	PANTHER:PTHR11240:SF35	InterPro:RNase_T2-like
InterPro:RNase_T2-like_sf	SUPFAM:SSF55895	UniParc:UPI0002951E7D	:	:	:

Description

RNase NE [Source:PGSC_GENE;Acc:PGSC0003DMG400002825]

Coordinates

chr4:+:269191..269514

Molecular Weight (calculated)

11809.3 Da

IEP (calculated)

5.065

GRAVY (calculated)

0.066

Length

107 amino acids

Sequence
(BLAST)

001: MRIQILNVPL IRPNSIFSGI QPNGGFYNLE AIKKAIEKGI EHTIGVECNI DLNGNSQLFE VYICVDKSGS NIIDCPIIPE TKRCNEIVEF AVFGSRNILD
101: GGHAYSL

Best Arabidopsis Sequence Match ( AT1G14210.1 )
(BLAST)

001: MRGIIIVSLL ILQSLVVSSS QTEPDFNFFY WVNYWPGAIC DSQKGCCPPT KGNTASDFII HGLWPQFNNG TWPAFCDQTN LFDISKISDL VCQMEKKWTE
101: WGVWACPSNE TNLWEHEWNK HGTCVQSIFD QHSYFRTNLK FKHKVHLLNI LIQKGIKPND GFYSLDEIKN AIKCAIGFAP GIECNEDVKG NKQLFQIYIC
201: LDNYAKEFVE CPYVPDKSCA SKIKFPSLPE RDSLNESLSV MSSVSTT

Arabidopsis Description

Ribonuclease T2 family protein [Source:UniProtKB/TrEMBL;Acc:F4HUG9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.