Factsheet for PGSC0003DMT400007421

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
mitochondrion 2
cytosol 2
extracellular 2

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g01250.t01	Wine grape	cytosol, nucleus, plastid	33.49	54.89
Solyc05g013210.2.1	Tomato	cytosol	31.19	54.84
GSMUA_Achr7P21030_001	Banana	extracellular	50.92	50.0
VIT_01s0026g02520.t01	Wine grape	extracellular	50.46	48.67
GSMUA_Achr5P23330_001	Banana	extracellular	49.08	47.14
PGSC0003DMT400007343	Potato	extracellular, mitochondrion, nucleus	22.48	45.79
VIT_01s0010g00450.t01	Wine grape	extracellular	17.43	40.43
Bra026847.1-P	Field mustard	extracellular	44.95	40.16
CDY33763	Canola	extracellular	44.95	40.16
GSMUA_Achr4P00460_001	Banana	endoplasmic reticulum, extracellular, plastid	48.17	39.77
KRG89632	Soybean	extracellular	42.66	39.08
AT1G14210.1	Thale cress	extracellular	44.04	38.87
CDX81620	Canola	extracellular	37.16	37.16
PGSC0003DMT400068755	Potato	extracellular	23.39	23.61
PGSC0003DMT400071177	Potato	cytosol, nucleus, peroxisome	21.56	19.67

Protein Annotations

Gene3D:3.90.730.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0033897	GO:GO:0090502	InterPro:IPR036430	UniProt:M0ZSY8	PFAM:PF00445
EnsemblPlantsGene:PGSC0003DMG400002857	PGSC:PGSC0003DMG400002857	EnsemblPlants:PGSC0003DMT400007421	ScanProsite:PS00530	ScanProsite:PS00531	PANTHER:PTHR11240
PANTHER:PTHR11240:SF35	InterPro:RNase_T2-like	InterPro:RNase_T2-like_sf	InterPro:RNase_T2_His_AS_1	InterPro:RNase_T2_His_AS_2	InterPro:Ribonuclease_T2_eukaryotic
SUPFAM:SSF55895	UniParc:UPI000296CA12	:	:	:	:

Description

Ribonuclease t2 [Source:PGSC_GENE;Acc:PGSC0003DMG400002857]

Coordinates

chr4:-:262942..265137

Molecular Weight (calculated)

24357.2 Da

IEP (calculated)

6.491

GRAVY (calculated)

-0.272

Length

218 amino acids

Sequence
(BLAST)

001: MGTQTKMFYA ARGEIWLPAL CDKKAACCYP TTGKPALDFG IHGLWPVYNN HTFPSNCNGN SPFDENQILD LMSDMQKDWP TLACPKNNGK KFWAHEWNKH
101: GTCSLSMLDM HSYFQVTLAL KEKVNLLQLL KNAGIRPDGG SYGMKAIKEA IKNGIGHDVV IECNNDVFGN NQLFQVYICV DKTGSDLIEC PMILKRKCDE
201: NIVFADFGSD TEGSFISL

Best Arabidopsis Sequence Match ( AT2G02990.1 )
(BLAST)

001: MKILLASLCL ISLLVILPSV FSASSSSEDF DFFYFVQQWP GSYCDTQKKC CYPNSGKPAA DFGIHGLWPN YKDGTYPSNC DASKPFDSST ISDLLTSMKK
101: SWPTLACPSG SGEAFWEHEW EKHGTCSESV IDQHEYFQTA LNLKQKTNLL GALTKAGINP DGKSYSLESI RDSIKESIGF TPWVECNRDG SGNSQLYQVY
201: LCVDRSGSGL IECPVFPHGK CGAEIEFPSF

Arabidopsis Description

RNS1Ribonuclease 1 [Source:UniProtKB/Swiss-Prot;Acc:P42813]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.