CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33763	Canola	extracellular	91.74	81.97
AT1G14210.1	Thale cress	extracellular	83.94	74.09
VIT_01s0010g00450.t01	Wine grape	extracellular	19.27	44.68
CDY40267	Canola	extracellular	41.74	40.99
CDY20583	Canola	extracellular	41.74	40.99
VIT_01s0026g02520.t01	Wine grape	extracellular	41.74	40.27
GSMUA_Achr7P21030_001	Banana	extracellular	39.91	39.19
CDX96863	Canola	extracellular	40.83	39.04
CDY33761	Canola	extracellular	40.37	38.77
GSMUA_Achr5P23330_001	Banana	extracellular	40.37	38.77
CDX84041	Canola	extracellular	40.37	38.6
CDY62181	Canola	extracellular	40.37	38.43
CDY03023	Canola	extracellular	39.91	37.99
CDY45186	Canola	extracellular	39.91	37.99
CDY09344	Canola	extracellular	40.37	37.93
KRG89632	Soybean	extracellular	41.28	37.82
PGSC0003DMT400007421	Potato	cytosol	37.16	37.16
CDY33762	Canola	peroxisome	35.32	35.48
Solyc04g005640.2.1	Tomato	extracellular	38.53	35.0
Solyc05g013210.2.1	Tomato	cytosol	19.72	34.68
VIT_01s0010g01250.t01	Wine grape	cytosol, nucleus, plastid	21.1	34.59
GSMUA_Achr4P00460_001	Banana	endoplasmic reticulum, extracellular, plastid	39.91	32.95
PGSC0003DMT400007343	Potato	extracellular, mitochondrion, nucleus	14.68	29.91
CDY60490	Canola	extracellular, plasma membrane, vacuole	25.23	21.48
CDY39709	Canola	extracellular	24.77	20.38
CDX81621	Canola	extracellular, nucleus, peroxisome	37.61	12.81

Protein Annotations

Gene3D:3.90.730.10	MapMan:35.1	GO:A0A078CXT0	EnsemblPlants:CDX81620	ProteinID:CDX81620	ProteinID:CDX81620.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488
GO:GO:0016787	GO:GO:0033897	EnsemblPlantsGene:GSBRNA2T00136531001	InterPro:IPR036430	PFAM:PF00445	ScanProsite:PS00530
PANTHER:PTHR11240	PANTHER:PTHR11240:SF19	InterPro:RNase_T2-like	InterPro:RNase_T2-like_sf	InterPro:RNase_T2_His_AS_1	InterPro:Ribonuclease_T2_eukaryotic
SUPFAM:SSF55895	SignalP:SignalP-noTM	UniParc:UPI0004EF0A79	SEG:seg	:	:

Description

BnaC08g39810D

Coordinates

chrLK031826:-:40205..41218

Molecular Weight (calculated)

25126.0 Da

IEP (calculated)

7.614

GRAVY (calculated)

-0.341

Length

218 amino acids

Sequence
(BLAST)

001: MRGIIIASFL ILQSLVVFSS PSPPDFNFFY WVTYWPGAIC DSQKGCCPPP KGNMASDFMI HGLWPQFNND TWPAFCDQTN LFDISKVSDL VSRMEKKWTE
101: WGVWTCPSNE TKLWEHEWNK HGTQYIKDST SLKQKFYNHY EIKNAIKCAI GYAPGIECNE DVKGTKQLFQ IYICLDNYAK EFVECPYVPD KSCASKIKFP
201: KFPKKYSLGE TQSVISSV

Best Arabidopsis Sequence Match ( AT1G14210.1 )
(BLAST)

001: MRGIIIVSLL ILQSLVVSSS QTEPDFNFFY WVNYWPGAIC DSQKGCCPPT KGNTASDFII HGLWPQFNNG TWPAFCDQTN LFDISKISDL VCQMEKKWTE
101: WGVWACPSNE TNLWEHEWNK HGTCVQSIFD QHSYFRTNLK FKHKVHLLNI LIQKGIKPND GFYSLDEIKN AIKCAIGFAP GIECNEDVKG NKQLFQIYIC
201: LDNYAKEFVE CPYVPDKSCA SKIKFPSLPE RDSLNESLSV MSSVSTT

Arabidopsis Description

Ribonuclease T2 family protein [Source:UniProtKB/TrEMBL;Acc:F4HUG9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.