CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX70995
CDX71796
CDX78905
CDX88803
CDX89063
CDX89999
CDX92368
CDX98596
CDX99411
CDY01565
CDY09128
CDY15210
CDY15212
CDY15214
CDY15215
CDY35676
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02990.1	CDX89999	AT1G01010.1	21798944
AT2G02990.1	CDY15210	AT1G01010.1	21798944
AT2G02990.1	CDY15212	AT1G01010.1	21798944
AT2G02990.1	CDY15214	AT1G01010.1	21798944
AT2G02990.1	CDY15215	AT1G01010.1	21798944
AT2G02990.1	CDX67837	AT3G60600.1	21798944
AT2G02990.1	CDX71796	AT3G60600.1	21798944
AT2G02990.1	CDX89063	AT3G60600.1	21798944
AT2G02990.1	CDY41153	AT3G60600.1	21798944
AT2G02990.1	CDY48365	AT3G60600.1	21798944
AT2G02990.1	CDX78905	AT4G19030.1	21798944
AT2G02990.1	CDX98596	AT4G19030.1	21798944
AT2G02990.1	CDX99411	AT4G19030.1	21798944
AT2G02990.1	CDY01565	AT4G19030.1	21798944
AT2G02990.1	CDX70995	AT5G22290.1	21798944
AT2G02990.1	CDX88803	AT5G22290.1	21798944
AT2G02990.1	CDX92368	AT5G22290.1	21798944
AT2G02990.1	CDY09128	AT5G22290.1	21798944
AT2G02990.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024795.1-P	Field mustard	extracellular	100.0	100.0
CDY03023	Canola	extracellular	97.38	97.38
AT2G02990.1	Thale cress	extracellular	88.21	87.83
CDY62181	Canola	extracellular	86.46	86.46
CDY09344	Canola	extracellular	86.9	85.78
KRH70736	Soybean	extracellular	67.69	68.28
KRG89631	Soybean	endoplasmic reticulum, extracellular	65.5	66.08
KRH74869	Soybean	endoplasmic reticulum, extracellular, plasma membrane	67.69	65.13
GSMUA_Achr5P23330_001	Banana	extracellular	63.76	64.32
GSMUA_Achr7P21030_001	Banana	extracellular	59.83	61.71
CDY40267	Canola	extracellular	57.64	59.46
CDY20583	Canola	extracellular	57.21	59.01
CDX96863	Canola	extracellular	58.52	58.77
CDX84041	Canola	extracellular	57.21	57.46
EES15044	Sorghum	extracellular	56.33	57.33
CDY33761	Canola	extracellular	56.33	56.83
TraesCS6A01G339600.1	Wheat	extracellular	55.02	55.26
Zm00001d032186_P001	Maize	extracellular	55.02	55.02
TraesCS6D01G320200.1	Wheat	extracellular	54.59	54.82
TraesCS6B01G370600.1	Wheat	extracellular	54.15	54.39
GSMUA_Achr4P00460_001	Banana	endoplasmic reticulum, extracellular, plastid	62.45	54.17
TraesCS2B01G278200.1	Wheat	extracellular	54.15	53.91
TraesCS2A01G264000.1	Wheat	extracellular	53.71	53.48
TraesCS2D01G260000.1	Wheat	extracellular	53.71	53.48
HORVU6Hr1G081930.1	Barley	cytosol	17.47	52.63
Os08t0434100-01	Rice	extracellular	51.97	51.97
CDY33762	Canola	peroxisome	48.91	51.61
HORVU0Hr1G017230.3	Barley	extracellular	51.09	51.09
HORVU2Hr1G062880.3	Barley	plastid	55.02	47.91
CDY33763	Canola	extracellular	46.29	43.44
HORVU6Hr1G081950.3	Barley	extracellular	38.43	43.35
CDX81620	Canola	extracellular	37.99	39.91
CDY60490	Canola	extracellular, plasma membrane, vacuole	33.19	29.69
CDY39709	Canola	extracellular	33.62	29.06
CDX81621	Canola	extracellular, nucleus, peroxisome	55.9	20.0

Protein Annotations

Gene3D:3.90.730.10	MapMan:35.1	GO:A0A078I5K0	UniProt:A0A078I5K0	EnsemblPlants:CDY45186	ProteinID:CDY45186
ProteinID:CDY45186.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0033897	GO:GO:0090502	EnsemblPlantsGene:GSBRNA2T00081610001	InterPro:IPR036430	PFAM:PF00445	ScanProsite:PS00530
ScanProsite:PS00531	PANTHER:PTHR11240	PANTHER:PTHR11240:SF35	InterPro:RNase_T2-like	InterPro:RNase_T2-like_sf	InterPro:RNase_T2_His_AS_1
InterPro:RNase_T2_His_AS_2	InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000253F86B
SEG:seg	:	:	:	:	:

Description

BnaA06g33900DBnaA06g33900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I5K0]

Coordinates

chrLK032617:-:104625..105777

Molecular Weight (calculated)

25400.6 Da

IEP (calculated)

4.544

GRAVY (calculated)

-0.314

Length

229 amino acids

Sequence
(BLAST)

001: MKLLHASLCL ISLLLILPSI FAASSSEDFD FFYFVQQWPG SYCDTQRSCC FPTSGKPAAD FGIHGLWPNY KDGTYPSNCD NTKPFDSSSI SDLISSMQKS
101: WPTLACPSGS GETFWEHEWE KHGTCSESVI DQHEYFQTAL NLKQKADLLG ALTKAGINPD GKSYSIESIR DSIKESTGFT PWIQCNTDES GNSQLYQVYL
201: CVDRSGSGLI ECPVFPRGKC GDEINFPSF

Best Arabidopsis Sequence Match ( AT2G02990.1 )
(BLAST)

001: MKILLASLCL ISLLVILPSV FSASSSSEDF DFFYFVQQWP GSYCDTQKKC CYPNSGKPAA DFGIHGLWPN YKDGTYPSNC DASKPFDSST ISDLLTSMKK
101: SWPTLACPSG SGEAFWEHEW EKHGTCSESV IDQHEYFQTA LNLKQKTNLL GALTKAGINP DGKSYSLESI RDSIKESIGF TPWVECNRDG SGNSQLYQVY
201: LCVDRSGSGL IECPVFPHGK CGAEIEFPSF

Arabidopsis Description

RNS1Ribonuclease 1 [Source:UniProtKB/Swiss-Prot;Acc:P42813]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.