Factsheet for HORVU2Hr1G062880.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
vacuole 1
mitochondrion 1
endoplasmic reticulum 1
extracellular 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G091830.4
HORVU6Hr1G060760.3
HORVU7Hr1G000910.1
HORVU7Hr1G071270.2
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02990.1	HORVU7Hr1G000910.1	AT1G01010.1	21798944
AT2G02990.1	HORVU2Hr1G091830.4	AT3G60600.1	21798944
AT2G02990.1	HORVU6Hr1G060760.3	AT3G60600.1	21798944
AT2G02990.1	HORVU7Hr1G071270.2	AT3G60600.1	21798944
AT2G02990.1	HORVU7Hr1G088900.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G260000.1	Wheat	extracellular	82.89	94.78
TraesCS2A01G264000.1	Wheat	extracellular	82.51	94.35
TraesCS2B01G278200.1	Wheat	extracellular	82.13	93.91
HORVU0Hr1G017230.3	Barley	extracellular	69.2	79.48
HORVU6Hr1G081930.1	Barley	cytosol	22.81	78.95
EES15044	Sorghum	extracellular	65.78	76.89
Zm00001d032186_P001	Maize	extracellular	66.16	75.98
Os08t0434100-01	Rice	extracellular	65.78	75.55
HORVU6Hr1G081950.3	Barley	extracellular	50.95	66.01
GSMUA_Achr7P21030_001	Banana	extracellular	48.67	57.66
GSMUA_Achr5P23330_001	Banana	extracellular	49.43	57.27
KRH70736	Soybean	extracellular	48.67	56.39
AT2G02990.1	Thale cress	extracellular	48.67	55.65
CDY62181	Canola	extracellular	48.29	55.46
Bra026570.1-P	Field mustard	extracellular	48.29	55.46
CDY09344	Canola	extracellular	48.67	55.17
KRG89631	Soybean	endoplasmic reticulum, extracellular	47.53	55.07
Bra024795.1-P	Field mustard	extracellular	47.91	55.02
CDY45186	Canola	extracellular	47.91	55.02
CDY03023	Canola	extracellular	47.91	55.02
KRH74869	Soybean	endoplasmic reticulum, extracellular, plasma membrane	48.29	53.36
GSMUA_Achr4P00460_001	Banana	endoplasmic reticulum, extracellular, plastid	46.01	45.83
HORVU2Hr1G028430.1	Barley	extracellular	41.06	45.0
HORVU1Hr1G093560.1	Barley	extracellular	30.04	32.24
HORVU1Hr1G093670.1	Barley	cytosol	26.62	31.67
HORVU1Hr1G093660.11	Barley	extracellular	30.04	31.6
HORVU1Hr1G093780.1	Barley	vacuole	29.28	31.43
HORVU1Hr1G093620.1	Barley	extracellular	27.38	28.57
HORVU2Hr1G037400.1	Barley	extracellular	18.63	28.0
HORVU6Hr1G017960.3	Barley	plastid	18.25	27.59
HORVU3Hr1G089550.5	Barley	endoplasmic reticulum, extracellular, vacuole	29.28	27.21
HORVU1Hr1G093570.1	Barley	vacuole	27.38	25.71
HORVU3Hr1G089580.5	Barley	cytosol, extracellular	29.66	25.41

Protein Annotations

Gene3D:3.90.730.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0033897	GO:GO:0090502	EnsemblPlantsGene:HORVU2Hr1G062880	EnsemblPlants:HORVU2Hr1G062880.3	InterPro:IPR036430
UniProt:M0V6P7	PFAM:PF00445	ScanProsite:PS00530	ScanProsite:PS00531	PANTHER:PTHR11240	PANTHER:PTHR11240:SF35
InterPro:RNase_T2-like	InterPro:RNase_T2-like_sf	InterPro:RNase_T2_His_AS_1	InterPro:RNase_T2_His_AS_2	InterPro:Ribonuclease_T2_eukaryotic	SUPFAM:SSF55895
UniParc:UPI000294A0C0	:	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:424543352..424544821

Molecular Weight (calculated)

28682.6 Da

IEP (calculated)

7.018

GRAVY (calculated)

-0.345

Length

263 amino acids

Sequence
(BLAST)

001: MDINAAYKST RPTGASIAPP RPINPSAAKT SRAMKLQCSL ALLIALGVGC AAAQESRKQA AYDFFYLVLQ WPGSYCDTKQ SCCYPRSGKP AADFGIHGLW
101: PNREDGSYPQ NCNPDSAFDP SKVSDLLSSL RSSWPTLACP TNDGLRFWAH EWEKHGTCAQ NLFDEHGYFQ TALRLRDQLR VLDALATAGI SPDGGYYTLG
201: AIKGAIQEGT GFAPHVDCNR DESGNSQLFQ LYFCVHADAS RFVDCPVQPG GRPCGNRIEF PAF

Best Arabidopsis Sequence Match ( AT1G26820.1 )
(BLAST)

001: MKFFIFILAL QQLYVQSFAQ DFDFFYFVLQ WPGAYCDSRH SCCYPQTGKP AADFGIHGLW PNYKTGGWPQ NCNPDSRFDD LRVSDLMSDL QREWPTLSCP
101: SNDGMKFWTH EWEKHGTCAE SELDQHDYFE AGLKLKQKAN LLHALTNAGI KPDDKFYEMK DIENTIKQVV GFAPGIECNK DSSHNSQLYQ IYLCVDTSAS
201: KFINCPVMPH GRCDSRVQFP KF

Arabidopsis Description

RNS3Ribonuclease 3 [Source:UniProtKB/Swiss-Prot;Acc:P42815]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.