Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G296400.1 | Wheat | cytosol | 80.68 | 97.94 |
| TraesCS7A01G300700.1 | Wheat | cytosol | 80.34 | 97.53 |
| Os08t0156700-01 | Rice | plasma membrane | 74.24 | 90.12 |
| EES14570 | Sorghum | cytosol, nucleus, plasma membrane | 71.19 | 86.07 |
| Zm00001d049553_P001 | Maize | plasma membrane | 69.83 | 84.43 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 54.92 | 67.78 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 53.9 | 66.53 |
| Solyc01g090910.2.1 | Tomato | nucleus | 50.85 | 64.38 |
| VIT_15s0048g00220.t01 | Wine grape | cytosol, nucleus, plasma membrane | 50.51 | 62.34 |
| Bra040323.1-P | Field mustard | cytosol, golgi, plasma membrane | 50.17 | 61.92 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 50.17 | 61.92 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 49.83 | 61.51 |
| Bra003313.1-P | Field mustard | cytosol | 46.44 | 61.44 |
| KRH65384 | Soybean | cytosol | 49.83 | 61.0 |
| CDY48365 | Canola | cytosol | 49.15 | 60.67 |
| AT2G45140.1 | Thale cress | cytosol | 49.15 | 60.67 |
| KRH76164 | Soybean | endoplasmic reticulum | 49.49 | 60.58 |
| Solyc10g018350.1.1 | Tomato | cytosol | 48.81 | 60.5 |
| CDY56247 | Canola | cytosol | 49.15 | 60.42 |
| CDX89063 | Canola | cytosol, golgi, plasma membrane | 48.81 | 60.25 |
| CDX71796 | Canola | cytosol | 48.47 | 60.08 |
| Bra014481.1-P | Field mustard | cytosol, golgi, plasma membrane | 48.47 | 59.83 |
| Bra007547.1-P | Field mustard | cytosol | 48.14 | 59.66 |
| CDY41153 | Canola | cytosol | 48.14 | 59.66 |
| Bra003423.1-P | Field mustard | cytosol, golgi, plasma membrane | 48.47 | 59.58 |
| CDY57247 | Canola | cytosol | 48.47 | 59.58 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 48.47 | 59.58 |
| HORVU2Hr1G091830.4 | Barley | cytosol | 50.17 | 59.44 |
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 48.47 | 59.34 |
| CDX95631 | Canola | cytosol, golgi, plasma membrane | 47.46 | 58.09 |
| HORVU6Hr1G060760.3 | Barley | cytosol, golgi, plasma membrane | 44.07 | 57.02 |
| HORVU0Hr1G021390.2 | Barley | cytosol, golgi, plasma membrane | 45.42 | 56.3 |
| AT3G60600.1 | Thale cress | cytosol | 48.47 | 55.86 |
| AT2G23830.1 | Thale cress | cytosol | 27.8 | 55.03 |
| PGSC0003DMT400066920 | Potato | cytosol | 48.81 | 53.93 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 50.85 | 53.57 |
| GSMUA_Achr11P... | Banana | cytosol | 35.93 | 53.0 |
| Bra035442.1-P | Field mustard | cytosol | 17.63 | 48.15 |
| PGSC0003DMT400055602 | Potato | cytosol, golgi, plasma membrane | 36.95 | 48.02 |
| Solyc06g034220.2.1 | Tomato | nucleus | 35.59 | 46.26 |
| PGSC0003DMT400076826 | Potato | cytosol | 8.81 | 43.33 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 13.9 | 40.2 |
| HORVU6Hr1G063580.1 | Barley | cytosol | 31.86 | 40.17 |
| HORVU2Hr1G097220.19 | Barley | plastid | 29.83 | 35.63 |
| HORVU3Hr1G099730.5 | Barley | cytosol | 35.59 | 27.93 |
| HORVU6Hr1G062050.9 | Barley | mitochondrion | 27.12 | 27.49 |
| HORVU2Hr1G003640.7 | Barley | cytosol | 15.59 | 21.9 |
| AT1G51270.3 | Thale cress | cytosol | 38.64 | 17.9 |
| HORVU3Hr1G006600.1 | Barley | cytosol | 19.32 | 8.02 |
| HORVU5Hr1G012420.3 | Barley | nucleus | 18.64 | 5.58 |
| HORVU6Hr1G011350.2 | Barley | cytosol | 2.71 | 0.64 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | UniProt:A0A287WTN6 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 |
| EnsemblPlantsGene:HORVU7Hr1G071270 | EnsemblPlants:HORVU7Hr1G071270.2 | InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:MSP_dom |
| PFAM:PF00635 | PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF94 | InterPro:PapD-like_sf |
| SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI000B480C66 | InterPro:VAP | SEG:seg | : |
Description
No Description!
Coordinates
chrchr7H:-:390238352..390245663
Molecular Weight (calculated)
32674.7 Da
IEP (calculated)
8.713
GRAVY (calculated)
-0.314
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: LQRQNCWKEN QSQISTSLLY FHVSSFVAPP RLPSLHPPPR DLPCLIASPS PAMASPGPVP AGELLRIDPI ELRFPFELKK QISCSMQLSN LSDDYIAFKV
101: KTTSPKKYSV RPNTGVVLPR STCDVVVTMQ AQREVPPDMQ CKDKFLVQIV VAPSGINVKD VTGEMFMKES GNKIEEVKLR VTYVAPPQPP SPVPEESEEG
201: SPSRVESENG DGPAGGFTRA LRERIDPQEK SLEAGALISK LTEEKNSAIQ QNHKIRQELD MMRREVSKRR GGGFSFVIVV IVALIGIFLG YMMKS
101: KTTSPKKYSV RPNTGVVLPR STCDVVVTMQ AQREVPPDMQ CKDKFLVQIV VAPSGINVKD VTGEMFMKES GNKIEEVKLR VTYVAPPQPP SPVPEESEEG
201: SPSRVESENG DGPAGGFTRA LRERIDPQEK SLEAGALISK LTEEKNSAIQ QNHKIRQELD MMRREVSKRR GGGFSFVIVV IVALIGIFLG YMMKS
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.