Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G45140.1 | CDY10468 | AT5G02100.1 | 19207211 |
| AT2G45140.1 | CDY40331 | AT5G02100.1 | 19207211 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003313.1-P | Field mustard | cytosol | 92.08 | 99.1 |
| CDY57247 | Canola | cytosol | 98.75 | 98.75 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 93.33 | 93.72 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 92.5 | 92.89 |
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 89.58 | 89.21 |
| CDX95631 | Canola | cytosol, golgi, plasma membrane | 88.75 | 88.38 |
| AT2G45140.1 | Thale cress | cytosol | 86.67 | 87.03 |
| CDY41153 | Canola | cytosol | 80.0 | 80.67 |
| CDX71796 | Canola | cytosol | 79.58 | 80.25 |
| CDX89063 | Canola | cytosol, golgi, plasma membrane | 79.58 | 79.92 |
| CDY48365 | Canola | cytosol | 78.75 | 79.08 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 78.75 | 78.75 |
| VIT_15s0048g00220.t01 | Wine grape | cytosol, nucleus, plasma membrane | 71.25 | 71.55 |
| Solyc01g090910.2.1 | Tomato | nucleus | 67.92 | 69.96 |
| KRH76164 | Soybean | endoplasmic reticulum | 70.0 | 69.71 |
| KRH65384 | Soybean | cytosol | 70.0 | 69.71 |
| Solyc10g018350.1.1 | Tomato | cytosol | 67.92 | 68.49 |
| TraesCS7A01G300700.1 | Wheat | cytosol | 60.83 | 60.08 |
| TraesCS7D01G296400.1 | Wheat | cytosol | 60.83 | 60.08 |
| Zm00001d049553_P001 | Maize | plasma membrane | 60.83 | 59.84 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 59.58 | 59.83 |
| Os08t0156700-01 | Rice | plasma membrane | 60.42 | 59.67 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 58.75 | 59.0 |
| CDX91914 | Canola | cytosol | 57.92 | 58.9 |
| CDX74330 | Canola | cytosol | 57.5 | 58.47 |
| PGSC0003DMT400066920 | Potato | cytosol | 65.0 | 58.43 |
| GSMUA_Achr1P20280_001 | Banana | cytosol | 51.67 | 57.94 |
| EES14570 | Sorghum | cytosol, nucleus, plasma membrane | 58.75 | 57.79 |
| Os04t0534400-01 | Rice | cytosol | 59.58 | 57.2 |
| TraesCS2A01G368500.1 | Wheat | cytosol | 59.17 | 57.03 |
| HORVU2Hr1G091830.4 | Barley | cytosol | 59.17 | 57.03 |
| PGSC0003DMT400055602 | Potato | cytosol, golgi, plasma membrane | 53.75 | 56.83 |
| TraesCS2B01G385700.2 | Wheat | cytosol | 58.75 | 56.63 |
| TraesCS2D01G365300.2 | Wheat | cytosol | 58.33 | 56.22 |
| Solyc06g034220.2.1 | Tomato | nucleus | 52.92 | 55.95 |
| EES12559 | Sorghum | cytosol | 57.5 | 55.42 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 61.67 | 52.86 |
| TraesCS6D01G220300.1 | Wheat | cytosol | 50.0 | 52.63 |
| Zm00001d017390_P001 | Maize | cytosol | 49.17 | 52.44 |
| TraesCS6B01G266100.1 | Wheat | cytosol, golgi, plasma membrane | 49.58 | 52.19 |
| HORVU6Hr1G060760.3 | Barley | cytosol, golgi, plasma membrane | 49.58 | 52.19 |
| TraesCS6A01G237600.1 | Wheat | cytosol, golgi, plasma membrane | 49.58 | 52.19 |
| KXG31128 | Sorghum | cytosol | 48.75 | 52.0 |
| Zm00001d051288_P001 | Maize | cytosol | 48.33 | 51.56 |
| GSMUA_Achr11P... | Banana | cytosol | 42.08 | 50.5 |
| HORVU7Hr1G071270.2 | Barley | mitochondrion | 60.42 | 49.15 |
| PGSC0003DMT400076826 | Potato | cytosol | 12.08 | 48.33 |
| Os02t0643000-01 | Rice | plasma membrane | 49.58 | 45.95 |
| Zm00001d025939_P003 | Maize | cytosol, golgi, plasma membrane | 55.83 | 44.97 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 18.75 | 44.12 |
| CDY33519 | Canola | cytosol | 39.58 | 43.58 |
| CDY40565 | Canola | cytosol | 39.58 | 43.58 |
| CDX77746 | Canola | cytosol | 39.58 | 43.58 |
| CDY28969 | Canola | cytosol | 39.58 | 43.58 |
| CDY43438 | Canola | cytosol | 38.33 | 41.82 |
| CDY25982 | Canola | cytosol | 37.92 | 41.36 |
| Zm00001d036342_P001 | Maize | cytosol | 38.75 | 37.2 |
| CDY06330 | Canola | cytosol | 41.67 | 29.15 |
| CDX93534 | Canola | cytosol | 41.67 | 26.95 |
| CDX95029 | Canola | cytosol | 40.83 | 26.2 |
| CDY32136 | Canola | cytosol | 39.17 | 24.74 |
| CDY31124 | Canola | cytosol | 39.17 | 24.67 |
| CDY22664 | Canola | plasma membrane | 41.67 | 23.58 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | GO:A0A078J2A8 | UniProt:A0A078J2A8 | EnsemblPlants:CDY56247 | ProteinID:CDY56247 |
| ProteinID:CDY56247.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00018009001 | InterPro:IPR000535 |
| InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:MSP_dom | PFAM:PF00635 | PIRSF:PIRSF019693 | PFscan:PS50202 |
| PANTHER:PTHR10809 | PANTHER:PTHR10809:SF94 | InterPro:PapD-like_sf | SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI0004EDB2B0 |
| InterPro:VAP | SEG:seg | : | : | : | : |
Description
BnaA07g37980DBnaA07g37980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2A8]
Coordinates
chrLK033471:+:36169..38677
Molecular Weight (calculated)
26738.1 Da
IEP (calculated)
8.440
GRAVY (calculated)
-0.460
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNELLDIDP IDLQFPFELK KQISSSLYLA NKTDDYVAFK VKTTNPKKYC VRPNTGVVLP RSSSEVLVTM QAQKEAPADM QCKDKFLLQC VVASPGATAK
101: DVTPEMFSKE AGHRVEETKL RVVYVDPPQP PSPVREGSEE GSSPRASVSD SANVSDFTTA PRFRVDRLEP QENSSEARAL ITRLTEEKNS ALQLNKKLQQ
201: ELEQLKRESK RSQSGGGIPF MYVLLVGLIG LILGYIMTRR
101: DVTPEMFSKE AGHRVEETKL RVVYVDPPQP PSPVREGSEE GSSPRASVSD SANVSDFTTA PRFRVDRLEP QENSSEARAL ITRLTEEKNS ALQLNKKLQQ
201: ELEQLKRESK RSQSGGGIPF MYVLLVGLIG LILGYIMTRR
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.