CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83400
CDX95631
CDY27392
CDY37029
CDY56247
CDY57247

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02100.1	CDX83400	AT2G45140.1	19207211
AT5G02100.1	CDX95631	AT2G45140.1	19207211
AT5G02100.1	CDY27392	AT2G45140.1	19207211
AT5G02100.1	CDY37029	AT2G45140.1	19207211
AT5G02100.1	CDY56247	AT2G45140.1	19207211
AT5G02100.1	CDY57247	AT2G45140.1	19207211

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10468	Canola	cytosol	96.25	96.25
Bra009613.1-P	Field mustard	nucleus	92.49	95.23
AT5G02100.1	Thale cress	cytosol, plastid	86.75	86.75
CDY41621	Canola	cytosol, plastid	84.77	84.77
CDY44693	Canola	cytosol, plastid	84.77	84.58
CDY07917	Canola	cytosol	81.46	83.11
CDX73970	Canola	cytosol	81.02	82.66
CDY22188	Canola	nucleus	30.46	78.41
CDX80271	Canola	cytosol	75.28	74.45
CDY33036	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	75.06	74.4
CDX75168	Canola	endoplasmic reticulum	26.27	23.85
CDY59861	Canola	endoplasmic reticulum	25.83	23.45
CDY51776	Canola	golgi	7.95	19.35
CDY21272	Canola	nucleus	27.81	18.16
CDX76366	Canola	cytosol	27.59	17.34
CDX82950	Canola	cytosol	27.37	17.06
CDX79161	Canola	cytosol	27.37	17.06
CDY34011	Canola	nucleus, plastid	28.92	16.71
CDX83144	Canola	nucleus, plastid	28.7	16.58
CDY42177	Canola	cytosol	27.59	16.4
CDX98007	Canola	cytosol	27.15	15.87
CDY19393	Canola	cytosol	27.15	15.81
CDX90832	Canola	nucleus	27.81	14.84
CDX75169	Canola	plastid	12.14	9.62
CDY64064	Canola	plastid	1.1	1.94
CDY14648	Canola	plastid	1.1	1.94

Protein Annotations

EnsemblPlants:CDY40331	EnsemblPlantsGene:GSBRNA2T00069516001	Gene3D:1.20.120.1290	Gene3D:2.40.160.120	InterPro:OSBP_sf	InterPro:Oxysterol-bd
InterPro:Oxysterol-bd_CS	PANTHER:PTHR10972	PANTHER:PTHR10972:SF136	PFAM:PF01237	ProteinID:CDY40331	ProteinID:CDY40331.1
ScanProsite:PS01013	SUPFAM:SSF144000	UniParc:UPI0004EE5117	UniProt:A0A078HRK1	MapMan:5.8.1.1	:

Description

BnaA10g27370DBnaA10g27370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRK1]

Coordinates

chrLK032468:+:154929..157210

Molecular Weight (calculated)

51383.2 Da

IEP (calculated)

4.867

GRAVY (calculated)

-0.628

Length

453 amino acids

Sequence
(BLAST)

001: MSPNDSKNSG GFFNSLASSI TNFGSVMTKS VNGLISYEGI EVINPDGSTE DAEEEAGRGR WKPEERDGYW KMMQKYIGSD ITSMVTLPVI IFEPMTTLQK
101: MAELMEYSHL LDMADKTQDP CMRMVYASTW AISVYYAYQR TWKPFNPILG ETYEMTNHNG INFIAEQVSH HPPMSAAHAE NEHFAYDCTS KLKSKLLGNS
201: IDFYPVGRTR VTLKRDGVVL DLVPPPTKAH NLIFGRTWVD SSGEMIMTNL TTGDKAVLYF QPCGWFGSGR YEVDGYVYNS AEEPKILVTG KWNESLSCQS
301: CDTEGEPLSG TELKEVCKVA ETPKKDKYQY THFAHKINSF DTAPSKLLSS DSRLRPDRYA LDTGDMTKAG YEKSILEERQ RAEKRTREEK GQPFVPKWFD
401: ETEEVTPTPW GDLEVYQFNG KYLVHRAAAD NSEINTDMES TQFNPWQFQD TSP

Best Arabidopsis Sequence Match ( AT5G02100.1 )
(BLAST)

001: MASNDPKNGG GFFASLASSI TNFGSAMSKS VNGLMGYEGL EVINPEGSTD DAEEEAGRGR WKQEERDGYW KMMQKYIGSD VTSMVTLPVI IFEPMTMLQK
101: MAELMEYSYL LDMADKTEDP YMRMVYASSW AISVYYAYQR TWKPFNPILG ETYEMTNHNG INFIAEQVCH HPPMSAGHAE NEHFAYDCTS KLKTKFLGNS
201: IDVYPVGRTR VTLKRDGVVL DLVPPLTKVH NLIFGRTWVD SPGEMVMTNL TTGDKVVLYF QPCGWFGSGR YEVDGYVYNS AEEPKMLMTG KWNESLSYQP
301: CDAEGEPLPG TELKEVWKVA EAPKNDKYQY THFAHKINSF DTAPKKLLSS DSRLRPDRYA LEMGDMSKSG FEKSSLEDRQ RAEKKSREEK GQKFAPKWFD
401: ETEEVTPTPW GDLEVYQFNG KYSVHRATAE NSEDTTDVKL TQFNPWQFQD LSA

Arabidopsis Description

ORP3AOxysterol-binding protein-related protein 3A [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM1]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.