CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000639.1-P	Field mustard	nucleus, plastid	99.74	99.87
CDY34011	Canola	nucleus, plastid	98.6	98.6
CDX75168	Canola	endoplasmic reticulum	55.61	87.37
HORVU6Hr1G024620.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	8.55	87.01
AT4G08180.4	Thale cress	cytosol	89.54	86.24
CDY59861	Canola	endoplasmic reticulum	54.72	85.97
HORVU2Hr1G031380.1	Barley	cytosol	34.82	80.29
CDX75169	Canola	plastid	58.04	79.55
HORVU3Hr1G049220.1	Barley	cytosol	17.35	76.4
VIT_18s0001g03790.t01	Wine grape	cytosol	74.62	75.88
KRH16599	Soybean	plastid	74.36	74.36
KRH53184	Soybean	plastid	74.74	74.27
KRH18807	Soybean	plastid	74.23	73.95
KRH64734	Soybean	plastid	73.72	73.82
PGSC0003DMT400074661	Potato	plastid	72.7	72.06
Solyc11g013190.1.1	Tomato	nucleus, plastid	74.11	71.64
OQU91126	Sorghum	plastid	71.17	69.58
GSMUA_Achr10P...	Banana	plastid	70.79	68.27
TraesCS4A01G271700.1	Wheat	plastid	69.9	68.24
Zm00001d033669_P003	Maize	plastid	71.05	67.93
TraesCS4B01G042300.2	Wheat	plastid	69.64	66.99
TraesCS4D01G039500.1	Wheat	plastid	69.9	66.99
GSMUA_Achr2P07260_001	Banana	plastid	60.08	66.81
Zm00001d013470_P007	Maize	plastid	69.52	66.71
CDY21272	Canola	nucleus	51.02	57.64
CDX98007	Canola	cytosol	56.51	57.16
CDY19393	Canola	cytosol	56.63	57.07
CDX76366	Canola	cytosol	51.66	56.17
CDX82950	Canola	cytosol	51.28	55.3
CDX79161	Canola	cytosol	51.15	55.16
CDY42177	Canola	cytosol	50.77	52.23
CDY64064	Canola	plastid	16.33	49.61
CDY14648	Canola	plastid	16.2	49.22
CDX90832	Canola	nucleus	51.53	47.59
CDY51776	Canola	golgi	10.84	45.7
GSMUA_Achr3P21140_001	Banana	nucleus	74.23	41.16
CDY44693	Canola	cytosol, plastid	18.24	31.5
CDY41621	Canola	cytosol, plastid	18.11	31.35
CDY07917	Canola	cytosol	17.73	31.31
CDX73970	Canola	cytosol	17.73	31.31
CDY22188	Canola	nucleus	6.89	30.68
CDY10468	Canola	cytosol	16.96	29.36
CDY33036	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	16.96	29.1
CDX80271	Canola	cytosol	16.84	28.82
CDY40331	Canola	cytosol, plastid	16.58	28.7

Protein Annotations

EnsemblPlants:CDX83144	EnsemblPlantsGene:GSBRNA2T00138670001	Gene3D:2.40.160.120	InterPro:IPR001849	InterPro:OSBP_sf	InterPro:Oxysterol-bd
InterPro:PH_domain	ncoils:Coil	PANTHER:PTHR10972	PANTHER:PTHR10972:SF100	PFAM:PF01237	PFAM:PF15413
PFscan:PS50003	ProteinID:CDX83144	ProteinID:CDX83144.1	SEG:seg	SMART:SM00233	SUPFAM:SSF144000
SUPFAM:SSF50729	UniParc:UPI0004EEE158	MapMan:35.1	:	:	:

Description

BnaA03g23620D

Coordinates

chrLK031832:+:44884..48742

Molecular Weight (calculated)

89411.0 Da

IEP (calculated)

6.677

GRAVY (calculated)

-0.732

Length

784 amino acids

Sequence
(BLAST)

001: MLSFCCVSTV SDHSLPMPLP EQPGVTRSEP IMTRSASHSQ SYNHHRHQSN RHPLHSLSFN HQSQPPPVDV KINDIVGNGI AGILHKWVNY GRGWRSRWFV
101: LQDGVLSYYK IHGPDKIFLS PESEKGSKVI GEESARMISS HHHHNKHGAS HLHRKPFGEV HLKVSSVRES RSDDKRFSIF TGTKRLHLRA DTREDRAAWV
201: EALQAVKDMF PRMSNSELMA PTNNLAMSTE KLRQRLIDEG VSELAIQDCE QIMRSEFSAL QSQLVLLKQK QWLLIDTLRQ LETEKVDLEN TLVDESQRQA
301: VNGGSIDLRH EKCSEGTATE SDDDHERGDA ETDEEDNTFF DTRDFLSSSS FKSSGSDFRT SSFSSDGDGV GSSEDDIDPS IKSIGCDYPH VKRRKSLPEP
401: VEKEKSVSLW SMIKDNIGKD LTKVCLPVYF NEPLSSLQKC FEDLEYSYLL DRAFEWGKRG NSLMRILNVA AFAVSGYAST EGRICKPFNP LLGETYEADY
501: PDKGLRFFSE KVSHHPMVVA CHCDGTGWKF WADSNLKSKF WGRSIQLDPV GVLTLQFDDG EILQWSKVTT SIYNLILGKL YCDHYGTMRI EGSAEYSCKL
601: KFKEQSIIDR NPHQVHGIVQ DKSGKTVATM FGKWDESMHY VTGDCSGKGK LSEDMSGAQL LWKRSKPPGN PTKYNLTRFA MTLNELTPGL KEKLPPTDSR
701: LRPDQRYLEN GEFEMANEEK LRLEQRQRQA RKMQERGWKP KWFTKEEGSE AYRYKGGYWE ARESGSWEDC PDIFGHIDSE QQTE

Best Arabidopsis Sequence Match ( AT4G08180.1 )
(BLAST)

001: MHPFCCVTTV SDHSPSMPPL PEPQPPLPNY AADFGSARSE PIITRSASQS YNHSGQFNNN LIHSLSFNHH QSDVTDRLGQ RVLALPAAVR EPPVDVKIND
101: IVGNGIAGIL YKWVNYGRGW RPRWFVLQDG VLSYYKIHGP DKIFVSPETE KGSKVIGDES ARMISRHNRR GGSSSSCQLR RKPFGEVHLK VSSVRESRSD
201: DKRFSIFTGT KRLHLRAETR EDRTTWVEAL QAVKDMFPRM SNSELMAPTN NLAMSTEKIR LRLIEEGVSE LAIQDCEQIM KSEFSALQSQ LVLLKQKQWL
301: LIDTLRQLET EKVDLENTVV DESQRQADNG CSGELRHEKF SEGTATESDD DNERGDAAEE EFDEEENTFF DTRDFLSSSS FKSSGSGFRT SSFSSDEDGF
401: ESEDDIDPSI KSIGCNYPRV KRRKNLPDPV EKEKSVSLWS MIKDNIGKDL TKVCLPVYFN EPLSSLQKCF EDLEYSYLLD RAFEYGKRGN SLMRILNVAA
501: FAVSGYASTE GRICKPFNPL LGETYEADYP DKGLRFFSEK VSHHPMVVAC HCDGTGWKFW GDSNLRSKFW GRSIQLDPVG VLTLQFDDGE ILQWSKVTTS
601: IYNLILGKLY CDHYGTMRIE GSAEYSCKLK FKEQSIIDRN PHQVHGIVQN KSGKTVATMF GKWDESIHFV TGDCSGKGKL SEDMSGAQLL WKRSKPPGNA
701: TKYNLTRFAI TLNELTPGLK ERLPPTDSRL RPDQRYLENG EFEMANTEKL RLEQRQRQAR KMQERGWKPR WFMKEKGSES YRYKGGYWEA REDGSWVDCP
801: DIFGHIDSDQ QMIE

Arabidopsis Description

ORP1COxysterol-binding protein-related protein 1C [Source:UniProtKB/Swiss-Prot;Acc:Q8L751]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.