Factsheet for TraesCS4B01G042300.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G039500.1	Wheat	plastid	98.28	97.92
TraesCS4A01G271700.1	Wheat	plastid	96.07	97.51
HORVU6Hr1G024620.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	8.96	94.81
HORVU2Hr1G031380.1	Barley	cytosol	38.65	92.65
HORVU3Hr1G049220.1	Barley	cytosol	19.88	91.01
OQU91126	Sorghum	plastid	88.1	89.53
Zm00001d033669_P003	Maize	plastid	87.98	87.44
Zm00001d013470_P007	Maize	plastid	85.89	85.68
CDX75168	Canola	endoplasmic reticulum	46.13	75.35
CDY59861	Canola	endoplasmic reticulum	45.28	73.95
Bra039764.1-P	Field mustard	endoplasmic reticulum	45.15	73.75
GSMUA_Achr10P...	Banana	plastid	72.15	72.32
CDX83144	Canola	nucleus, plastid	66.99	69.64
Bra000639.1-P	Field mustard	nucleus, plastid	66.87	69.6
CDY34011	Canola	nucleus, plastid	66.63	69.26
AT2G31030.1	Thale cress	cytosol	41.23	68.71
VIT_07s0031g02980.t01	Wine grape	plastid	64.05	68.06
GSMUA_Achr2P07260_001	Banana	plastid	58.53	67.66
AT4G08180.4	Thale cress	cytosol	66.99	67.08
AT2G31020.1	Thale cress	plastid	62.82	65.81
KRH53998	Soybean	plastid	61.35	62.66
KRH63940	Soybean	nucleus, plastid	60.98	62.52
PGSC0003DMT400020224	Potato	cytosol	48.1	60.03
PGSC0003DMT400029169	Potato	nucleus	56.81	59.82
Solyc12g010510.1.1	Tomato	cytosol, mitochondrion, plastid	48.1	59.76
Solyc07g006100.2.1	Tomato	nucleus	57.06	59.54
CDX75169	Canola	plastid	41.72	59.44
TraesCS5B01G116700.1	Wheat	cytosol	53.62	58.5
TraesCS1B01G224800.1	Wheat	cytosol	47.61	52.29
TraesCS4B01G375900.1	Wheat	cytosol	45.15	51.11
TraesCS7B01G202100.1	Wheat	cytosol	46.01	50.61
GSMUA_Achr3P21140_001	Banana	nucleus	73.99	42.65
TraesCS4B01G207800.1	Wheat	cytosol	16.69	29.37

Protein Annotations

EnsemblPlants:TraesCS4B01G042300.2	EnsemblPlantsGene:TraesCS4B01G042300	Gene3D:2.40.160.120	InterPro:IPR001849	InterPro:OSBP_sf	InterPro:Oxysterol-bd
InterPro:PH_domain	ncoils:Coil	PANTHER:PTHR10972	PANTHER:PTHR10972:SF100	PFAM:PF01237	PFAM:PF15413
PFscan:PS50003	SEG:seg	SMART:SM00233	SUPFAM:SSF144000	SUPFAM:SSF50729	TIGR:cd13294
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:28949569..28960040

Molecular Weight (calculated)

91487.3 Da

IEP (calculated)

7.216

GRAVY (calculated)

-0.728

Length

815 amino acids

Sequence
(BLAST)

001: MHPFCCVPPV PVSPASSAAA AAAAAPPAVA GLPPAMPPPP PPPPQPARCC SSSSAAGGER RARVGVGGGP SSPPDGVRLN EIVGGGISGV LYKWVNYGRG
101: WRPRWFALSD GVLSYYKIHG PDRIDLSRDT DRGAKVIGED SLRRLARPSA TPAPSSSSSA APHSNGHHHH HHHHHTPRKP LGEIHLKVST VRESRSDDRR
201: FSVFSGTKRL HLRAETREDR AAWLEALRAT KEMFPRMSTS EMVGPGDTAA AAAVSTERLK KRLQQEGVSD AAVADSERIV REEFEALHKQ LVLLKQKQAL
301: LLDTLRHLET EKVDLENTLV DESQRQSKEY GSASRPRNEK LSEGSGSESD DYNEPQDPAE EETDDEENIY FDTTDFLSSS SFKSSGSDFQ RSEAGSDDED
401: DYPMDGIDPS MKSVGINYPY VRRRKKLPDP VEKEKGVSLW SMIKDNIGKD LTKVCLPVYF NEPLSSLQKC FEDLEYSYLI DRAYEWGKRG DSLMRILSVA
501: AFAVSGYAST DGRSCKPFNP LLGETYEADY PDKGLRFFSE KVSHHPMVVA CHCEGNGWRF WADSNLKSKF WGRSIQLDPV GVLTLEFDDG EVFQWSKVTT
601: SIYNLILGKL YCDHYGTMRI QGNREYSCKL KFKEQSIIDR NPHQVQGVIQ DRSGRTVATL FGKWDESMHY VMGDCFGKGK GSENFSEAHL LWKRSKPPKF
701: PTRYNFTSFA ITLNELTPGL KEKLPPTDSR LRPDQRCLEN GEYERANAEK LRLEQRQRQA RKMQESGWKP RWFAKDKGSD TYRYLGGYWE SREKSNWEGC
801: PDIFGQLPND LMITD

Best Arabidopsis Sequence Match ( AT4G08180.1 )
(BLAST)

001: MHPFCCVTTV SDHSPSMPPL PEPQPPLPNY AADFGSARSE PIITRSASQS YNHSGQFNNN LIHSLSFNHH QSDVTDRLGQ RVLALPAAVR EPPVDVKIND
101: IVGNGIAGIL YKWVNYGRGW RPRWFVLQDG VLSYYKIHGP DKIFVSPETE KGSKVIGDES ARMISRHNRR GGSSSSCQLR RKPFGEVHLK VSSVRESRSD
201: DKRFSIFTGT KRLHLRAETR EDRTTWVEAL QAVKDMFPRM SNSELMAPTN NLAMSTEKIR LRLIEEGVSE LAIQDCEQIM KSEFSALQSQ LVLLKQKQWL
301: LIDTLRQLET EKVDLENTVV DESQRQADNG CSGELRHEKF SEGTATESDD DNERGDAAEE EFDEEENTFF DTRDFLSSSS FKSSGSGFRT SSFSSDEDGF
401: ESEDDIDPSI KSIGCNYPRV KRRKNLPDPV EKEKSVSLWS MIKDNIGKDL TKVCLPVYFN EPLSSLQKCF EDLEYSYLLD RAFEYGKRGN SLMRILNVAA
501: FAVSGYASTE GRICKPFNPL LGETYEADYP DKGLRFFSEK VSHHPMVVAC HCDGTGWKFW GDSNLRSKFW GRSIQLDPVG VLTLQFDDGE ILQWSKVTTS
601: IYNLILGKLY CDHYGTMRIE GSAEYSCKLK FKEQSIIDRN PHQVHGIVQN KSGKTVATMF GKWDESIHFV TGDCSGKGKL SEDMSGAQLL WKRSKPPGNA
701: TKYNLTRFAI TLNELTPGLK ERLPPTDSRL RPDQRYLENG EFEMANTEKL RLEQRQRQAR KMQERGWKPR WFMKEKGSES YRYKGGYWEA REDGSWVDCP
801: DIFGHIDSDQ QMIE

Arabidopsis Description

ORP1COxysterol-binding protein-related protein 1C [Source:UniProtKB/Swiss-Prot;Acc:Q8L751]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.