CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59861	Canola	endoplasmic reticulum	97.6	97.6
HORVU6Hr1G024620.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	13.43	87.01
HORVU2Hr1G031380.1	Barley	cytosol	53.51	78.53
HORVU3Hr1G049220.1	Barley	cytosol	27.45	76.97
CDX83144	Canola	nucleus, plastid	87.37	55.61
CDY34011	Canola	nucleus, plastid	87.17	55.48
AT4G08180.4	Thale cress	cytosol	86.97	53.32
VIT_18s0001g03790.t01	Wine grape	cytosol	76.75	49.68
KRH53184	Soybean	plastid	75.95	48.04
KRH64734	Soybean	plastid	74.95	47.77
TraesCS4A01G271700.1	Wheat	plastid	75.55	46.95
CDY51776	Canola	golgi	17.43	46.77
OQU91126	Sorghum	plastid	75.15	46.76
KRH16599	Soybean	plastid	73.15	46.56
KRH18807	Soybean	plastid	73.35	46.51
PGSC0003DMT400074661	Potato	plastid	73.55	46.4
GSMUA_Achr10P...	Banana	plastid	75.35	46.25
TraesCS4D01G039500.1	Wheat	plastid	75.75	46.21
TraesCS4B01G042300.2	Wheat	plastid	75.35	46.13
Zm00001d033669_P003	Maize	plastid	74.95	45.61
Solyc11g013190.1.1	Tomato	nucleus, plastid	73.95	45.5
Zm00001d013470_P007	Maize	plastid	73.35	44.8
CDY21272	Canola	nucleus	60.32	43.37
GSMUA_Achr2P07260_001	Banana	plastid	60.32	42.7
CDX76366	Canola	cytosol	61.32	42.44
CDX82950	Canola	cytosol	60.72	41.68
CDX79161	Canola	cytosol	60.32	41.4
CDX98007	Canola	cytosol	62.32	40.13
CDY19393	Canola	cytosol	62.32	39.97
CDY42177	Canola	cytosol	60.72	39.76
CDX75169	Canola	plastid	41.08	35.84
CDX90832	Canola	nucleus	60.72	35.69
CDY22188	Canola	nucleus	10.42	29.55
CDX73970	Canola	cytosol	26.05	29.28
CDY07917	Canola	cytosol	26.05	29.28
CDY44693	Canola	cytosol, plastid	26.05	28.63
CDY41621	Canola	cytosol, plastid	25.85	28.48
CDY33036	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	25.05	27.35
CDX80271	Canola	cytosol	24.85	27.07
CDY10468	Canola	cytosol	24.25	26.71
GSMUA_Achr3P21140_001	Banana	nucleus	75.15	26.52
CDY40331	Canola	cytosol, plastid	23.85	26.27
CDY14648	Canola	plastid	2.2	4.26
CDY64064	Canola	plastid	2.2	4.26

Protein Annotations

EnsemblPlants:CDX75168	EnsemblPlantsGene:GSBRNA2T00119063001	Gene3D:2.40.160.120	InterPro:OSBP_sf	InterPro:Oxysterol-bd	ncoils:Coil
PANTHER:PTHR10972	PANTHER:PTHR10972:SF100	PFAM:PF01237	ProteinID:CDX75168	ProteinID:CDX75168.1	SignalP:SignalP-noTM
SUPFAM:SSF144000	UniParc:UPI0004EE3FC4	MapMan:35.1	:	:	:

Description

BnaC09g25140D

Coordinates

chrLK031803:-:2017773..2021084

Molecular Weight (calculated)

57442.8 Da

IEP (calculated)

5.901

GRAVY (calculated)

-0.681

Length

499 amino acids

Sequence
(BLAST)

001: MIVLLLSLIM AVISLVLERE LKNEPVSLVA EEHFRASWCF SNEDLENTVV DESQRHTENE GPNDLRNEKF SGFISEGTAT ESDDENERED DIDPSIKSVG
101: FNYPRVKRRK SLPDPVEKEK SVSLWSMIKD NIGKDLTKVC LPVYFNEPLS SLQECFEDLE YSYLLDRTFE WGKRGNTLMR ILNVAAFAVS GYASTEGRIC
201: KPFNPVLGET YEADYPDKGL RFFSEKVSHH PMVVACHCDG TGWKFWADSN LKSKFWGRSI QLDPVGVLTL KFDDGEILQW SKVTTSIYNL ILGKLYCDHY
301: GTMRIEGNAE YSCKLKFKEQ SIIDRNPHQV HGIVQDKSGK TVATMFGKWD ESMHYVTGDC SGKGKLSEDM SGAQLLWKRS KPPGNATKYN LTRFAITLNE
401: LTPGLKEKLP PTDSRLRPDQ RYLENGEFEM ANTEKLRLEQ RQRQARKMQE RGWKPRWFTK EKGSEAYRYK GGYWEARERG SWDNCPDIFG HIDSEQQIE

Best Arabidopsis Sequence Match ( AT2G31020.1 )
(BLAST)

001: MHPFCCVSDH SPSTPSFSMY AATPETPFGS ARSQPVITRS VSQRYNHPGQ SNHHHLLHSL SFNHQNVLAL PAAAREPPVD VKINDIAGNS IAGILYKWVN
101: YGKGWRPRWF VLQDGVLSYY KIKGPDKIVV IHETEKGSRV IGEESTRMIS RNKRHAATNN TNHQLRRKPF GEVHLKVSSI RESRSDDKRF SIFTGTKRLH
201: LRAETREDRE AWIEALQAVK DMFPRMSNCE LMAPTNNLDI SIEKLRLRLV EEGVSESAIQ DCEQITRSEF SAIQSQLLLL KQKQWLLIDT LRQLETEKVD
301: LENTVVDETQ RQAGNGDSEE TISESDDDNE QFDEAEEEMD TCDSLSSSSF KSIGSVFRTS SFSSDDDGLT NGFESENDDV DPSIKTIGFN YPHVKRRKKL
401: PDPVEKEKSV SLWSMIKDNI GKDLTKVCLP VYFNEPLSSL QKCFEDLEYS YLLDQASEWG KRGNNLMRIL NVAAFAVSGY ASTEGRICKP FNPMLGETYE
501: ADYPDKGLRF FSEKVSHHPM IVACHCDGTG WKFWGDSNLK SKFWGRSIQL DPIGLLTLQF DDGEIVQWSK VTTSIYNLIL GKLYCDHYGT MKIEGNGEYS
601: CKLKFKEQSM IDRNPHQVQG IVEDKNGKTV ARLFGKWDES IHYVMVDQGK VNESHLLWKR NKQPENPTKY NLTRFGITLN ELTPGLKEKL PPTDSRLRPD
701: QRYLEKGEYE MGNAEKLRLE QRQRQAREMQ ERGWKPKWFR KEKGSETYRY IGGYWEARDS GSWDDCPDIF GQVHQSIK

Arabidopsis Description

ORP1AORP1A [Source:UniProtKB/TrEMBL;Acc:A0A178VQE1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.