CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73970	Canola	cytosol	98.42	98.42
CDY22188	Canola	nucleus	37.16	93.75
CDY41621	Canola	cytosol, plastid	95.5	93.6
CDY44693	Canola	cytosol, plastid	95.27	93.17
AT3G09300.1	Thale cress	nucleus, plastid	92.57	89.74
CDY10468	Canola	cytosol	83.78	82.12
CDY40331	Canola	cytosol, plastid	83.11	81.46
CDX80271	Canola	cytosol	79.28	76.86
CDY33036	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	79.05	76.81
CDX75168	Canola	endoplasmic reticulum	29.28	26.05
CDY59861	Canola	endoplasmic reticulum	28.83	25.65
CDY51776	Canola	golgi	9.23	22.04
CDY21272	Canola	nucleus	28.15	18.01
CDY34011	Canola	nucleus, plastid	31.53	17.86
CDX76366	Canola	cytosol	28.83	17.75
CDX83144	Canola	nucleus, plastid	31.31	17.73
CDX82950	Canola	cytosol	28.15	17.19
CDX79161	Canola	cytosol	28.15	17.19
CDX98007	Canola	cytosol	29.73	17.03
CDY19393	Canola	cytosol	29.73	16.97
CDY42177	Canola	cytosol	29.05	16.93
CDX90832	Canola	nucleus	28.15	14.72
CDX75169	Canola	plastid	12.61	9.79
CDY64064	Canola	plastid	0.68	1.16
CDY14648	Canola	plastid	0.68	1.16

Protein Annotations

EnsemblPlants:CDY07917	EnsemblPlantsGene:GSBRNA2T00125117001	Gene3D:1.20.120.1290	Gene3D:2.40.160.120	InterPro:OSBP_sf	InterPro:Oxysterol-bd
InterPro:Oxysterol-bd_CS	PANTHER:PTHR10972	PANTHER:PTHR10972:SF136	PFAM:PF01237	ProteinID:CDY07917	ProteinID:CDY07917.1
ScanProsite:PS01013	SUPFAM:SSF144000	UniParc:UPI0004EE2829	UniProt:A0A078F4C0	MapMan:5.8.1.1	:

Description

BnaC03g36060DBnaC03g36060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4C0]

Coordinates

chrLK031982:+:100171..102586

Molecular Weight (calculated)

50773.7 Da

IEP (calculated)

4.763

GRAVY (calculated)

-0.626

Length

444 amino acids

Sequence
(BLAST)

001: MSIFGAIAPS ISNWVSAVTK SVNGLVGYEG VEVINPEGSN EDAAEEANKG RWNQEDRDGY WKMMQKYIGS DVTSMVTLPV IIFEPMTMLQ KMAELMEYSH
101: LLDMADKTDD PYMRMVYASS WAISVYYAFQ RTWKPFNPIL GETYEMANYN GVNFISEQVS HHPPMSAGHA ENEHFTYDCT SKLKTKFLGN SIDVYPVGRT
201: RVTLKRDGVV LDLVPPLTKV HNLIFGRTWV DSPGEMIMTN LTTGDKVVLY FQPCGWFGSG RYEVDGYVYN ASEEPKILMT GKWNESMSYQ QCDGEGEPLP
301: GTELKEVWKL ADVPKDDKYQ YTHFAHKINS FDTAPKKLLP SDSRLRPDRY ALEMGDMSKS GNEKSSLEER QRAEKRTREE KGQSFTPKWF DITEEVTPTP
401: WGDLEVYQFN GKYLEHREVA DKSEDNTDPK SIPFNPWQFQ DMSA

Best Arabidopsis Sequence Match ( AT3G09300.1 )
(BLAST)

001: MAPNDPKKAV GGGGSGFFAS LASSISNLGS AMTKSVNGLV PYEGLEVINP EGSTDDAEEE ASRGRWKQED RDGYWKMMQK YIGSDVTSMV TLPVIIFEPM
101: TMLQKMAELM EYSHLLDMAD KTEDPYLRMV YASSWAISVY YAFQRTWKPF NPILGETYEM ANYNGVNFIS EQVSHHPPMS AGHAENEHFT YDCTSKLKTK
201: FLGNSIDVYP VGRTRVTLKR DGVVLDLVPP LTKVHNLIFG RTWVDSPGEM IMTNQTTGDK VVLYFQPCGW FGSGRYEVDG YVYNASEEPK ILMTGKWNES
301: MSYQPCDGEG EPLPGTELKE VWKLADVPKD DKYQYTHFAH KINSFDTAPK KLLPSDSRLR PDRYALEMGD MSKSGYEKSS MEERQRAEKR TREEKGQAFT
401: PKWFDVTEEV TATPWGDLEV YQFNGKYSEH RAAADNSEDN TDPKSIQFNP WQFQDLST

Arabidopsis Description

ORP3BORP3B [Source:UniProtKB/TrEMBL;Acc:A0A178VKM3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.