CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, secretory
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002568.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	98.91	98.91
CDX80271	Canola	cytosol	97.37	97.16
AT5G59420.1	Thale cress	cytosol, plastid	92.78	92.78
KRH10248	Soybean	endoplasmic reticulum	86.65	86.84
VIT_06s0004g04930.t01	Wine grape	cytosol	85.56	85.75
KRH24783	Soybean	plastid	84.03	85.33
KRH29789	Soybean	endoplasmic reticulum	83.15	84.44
CDY44693	Canola	cytosol, plastid	78.99	79.52
CDY41621	Canola	cytosol, plastid	78.56	79.25
CDY07917	Canola	cytosol	76.81	79.05
CDX73970	Canola	cytosol	76.37	78.6
GSMUA_Achr9P03900_001	Banana	cytosol	78.12	78.12
KRG93817	Soybean	cytosol	15.32	77.78
GSMUA_Achr1P17320_001	Banana	cytosol	77.24	76.57
CDY10468	Canola	cytosol	74.62	75.28
Zm00001d028606_P002	Maize	cytosol	75.93	75.27
CDY40331	Canola	cytosol, plastid	74.4	75.06
Os03t0274000-01	Rice	plasma membrane	75.71	74.73
Zm00001d047812_P001	Maize	extracellular	75.71	74.25
CDY22188	Canola	nucleus	28.45	73.86
TraesCS4A01G096600.1	Wheat	cytosol	73.09	72.14
TraesCS4D01G208700.1	Wheat	golgi	72.65	71.71
TraesCS4B01G207800.1	Wheat	cytosol	72.65	71.71
HORVU4Hr1G059840.1	Barley	cytosol	72.21	71.12
OQU92826	Sorghum	cytosol	76.15	70.59
Zm00001d037837_P002	Maize	endoplasmic reticulum, extracellular	39.61	58.77
Zm00001d034225_P002	Maize	endoplasmic reticulum, extracellular	42.45	54.49
Zm00001d006081_P001	Maize	cytosol	20.13	54.44
Zm00001d012754_P001	Maize	cytosol	34.57	50.16
Zm00001d052202_P001	Maize	cytosol	41.36	46.9
Zm00001d040358_P001	Maize	cytosol	42.67	38.24
CDX75168	Canola	endoplasmic reticulum	27.35	25.05
CDY59861	Canola	endoplasmic reticulum	26.7	24.45
CDY51776	Canola	golgi	8.97	22.04
CDY21272	Canola	nucleus	28.45	18.73
CDX76366	Canola	cytosol	28.88	18.31
CDX82950	Canola	cytosol	28.45	17.88
CDX79161	Canola	cytosol	28.45	17.88
CDY42177	Canola	cytosol	28.67	17.19
CDY34011	Canola	nucleus, plastid	29.32	17.09
CDX83144	Canola	nucleus, plastid	29.1	16.96
CDX98007	Canola	cytosol	28.23	16.65
CDY19393	Canola	cytosol	28.23	16.58
CDX90832	Canola	nucleus	28.45	15.31
CDX75169	Canola	plastid	12.69	10.14
CDY14648	Canola	plastid	1.31	2.33
CDY64064	Canola	plastid	1.31	2.33

Protein Annotations

EnsemblPlants:CDY33036	EnsemblPlantsGene:GSBRNA2T00053271001	Gene3D:1.20.120.1290	Gene3D:2.40.160.120	GO:A0A078H5B2	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:OSBP_sf	InterPro:Oxysterol-bd	InterPro:Oxysterol-bd_CS	PANTHER:PTHR10972
PANTHER:PTHR10972:SF136	PFAM:PF01237	ProteinID:CDY33036	ProteinID:CDY33036.1	ScanProsite:PS01013	SEG:seg
SUPFAM:SSF144000	TMHMM:TMhelix	UniParc:UPI0004EEFFD1	UniProt:A0A078H5B2	MapMan:5.8.1.1	:

Description

BnaA10g12420DBnaA10g12420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5B2]

Coordinates

chrLK032304:+:380148..383021

Molecular Weight (calculated)

51859.8 Da

IEP (calculated)

4.885

GRAVY (calculated)

-0.616

Length

457 amino acids

Sequence
(BLAST)

001: MGSPKKNENK GFFAAMTSGF SMFGSAMSRS VNGLLAYEGV EVINPDGGKE DAEEEAQRGR WKDEERDSYW KMMQKYIGSD ITSMVTLPVI IFEPMTMLQK
101: MAELMEYSYL LDQADECEDP YLRLVYASSW AISVYFAYQR TWKPFNPILG ETYEMANHGG ISFLSEQVSH HPPMSAGHAE NEHFTYDVTS KLKTKLLGNS
201: VDVYPVGRTR VTLKKDGVVL DLVPPLTKIH NLIFGRTWVD SPGEMVMTNI TTGDKVVLYF QPCGWFGSGR YEVDGYVYSA DEEPKIMMTG KWNEKISYQP
301: CDAEGEPLPG TELKEVWHVA DVPKNDKFQY THFAHKINSF DTAPATLLAS DSRLRPDRYA LEQGDLSKAG SEKHSLEERQ RAEKRTRETK GQKFTPRWFD
401: LTDEITSTPW GDIEIYQYNG KYNEHRDAAA SSSGASNADD LKSIEFNPWQ YGNVSTE

Best Arabidopsis Sequence Match ( AT5G59420.1 )
(BLAST)

001: MGSPKKNENK GFFAAMTSGF SMFGTAVSRS VNGVQGNEGV EVINPEGGKE DAEEEAQKGR WKDEERDSYW KMMQKYIGSD ITSMVTLPVV IFEPMTMLQK
101: MAEIMEYSHL LDQADECEDP YLRLVYASSW AISVYYAFQR TWKPFNPILG ETYEMVNHGG ISFISEQVSH HPPMSAGHAE NEHFIYDITS KLKTKLLGNS
201: VDVYPVGRTR VTLKKDGVVL DLVPPLTKIH NLIFGRTWVD SPGEMVMTNL TTGDKVVLYF QPCGWFGSGR YEVDGYVYSA AEEPKIMMTG KWNEKMSYQP
301: CDAEGEPLPG TELKEVWHLA DVPKNDNFQY THFAHKINSF DTAPAKLLAS DSRIRPDRYS LEQGDLSKAG SEKHSLEERQ RAEKRTRETK GQKFTPRWFD
401: LTDEITPTPW GDIEVYQYNG KYNEHRDTAE SSSSASNETD LKSIEFNPWQ YGNISTE

Arabidopsis Description

ORP3COxysterol-binding protein-related protein 3C [Source:UniProtKB/Swiss-Prot;Acc:Q93Y40]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.