CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G024620.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	7.87	58.44
CDX83144	Canola	nucleus, plastid	79.55	58.04
CDY34011	Canola	nucleus, plastid	79.37	57.91
AT4G08180.4	Thale cress	cytosol	82.17	57.74
VIT_18s0001g03790.t01	Wine grape	cytosol	65.91	48.9
KRH53184	Soybean	plastid	66.78	48.42
KRH16599	Soybean	plastid	66.26	48.34
KRH64734	Soybean	plastid	66.08	48.28
KRH18807	Soybean	plastid	66.26	48.16
CDY64064	Canola	plastid	21.68	48.06
CDY14648	Canola	plastid	21.5	47.67
Solyc11g013190.1.1	Tomato	nucleus, plastid	65.91	46.49
PGSC0003DMT400074661	Potato	plastid	63.99	46.27
OQU91126	Sorghum	plastid	60.31	43.02
TraesCS4A01G271700.1	Wheat	plastid	59.97	42.71
Zm00001d033669_P003	Maize	plastid	60.49	42.2
TraesCS4B01G042300.2	Wheat	plastid	59.44	41.72
TraesCS4D01G039500.1	Wheat	plastid	59.62	41.69
GSMUA_Achr10P...	Banana	plastid	58.92	41.45
Zm00001d013470_P007	Maize	plastid	58.92	41.25
CDX75168	Canola	endoplasmic reticulum	35.84	41.08
CDY59861	Canola	endoplasmic reticulum	35.84	41.08
HORVU2Hr1G031380.1	Barley	cytosol	23.43	39.41
GSMUA_Achr2P07260_001	Banana	plastid	46.33	37.59
CDX98007	Canola	cytosol	47.03	34.71
CDY19393	Canola	cytosol	47.2	34.7
CDY21272	Canola	nucleus	38.46	31.7
CDX79161	Canola	cytosol	40.03	31.5
CDX76366	Canola	cytosol	39.69	31.48
CDX82950	Canola	cytosol	39.86	31.36
CDY42177	Canola	cytosol	38.64	29.0
GSMUA_Achr3P21140_001	Banana	nucleus	66.26	26.8
CDX90832	Canola	nucleus	38.81	26.15
CDY41621	Canola	cytosol, plastid	10.49	13.24
CDY44693	Canola	cytosol, plastid	10.49	13.22
CDY33036	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	10.14	12.69
CDX80271	Canola	cytosol	10.14	12.66
CDX73970	Canola	cytosol	9.79	12.61
CDY07917	Canola	cytosol	9.79	12.61
CDY10468	Canola	cytosol	9.79	12.36
CDY40331	Canola	cytosol, plastid	9.62	12.14
HORVU3Hr1G049220.1	Barley	cytosol	1.57	5.06
CDY22188	Canola	nucleus	0.52	1.7
CDY51776	Canola	golgi	0.0	0.0

Protein Annotations

EnsemblPlants:CDX75169	EnsemblPlantsGene:GSBRNA2T00119064001	InterPro:IPR001849	InterPro:OSBP_sf	InterPro:Oxysterol-bd	InterPro:PH_domain
ncoils:Coil	PANTHER:PTHR10972	PANTHER:PTHR10972:SF100	PFAM:PF01237	PFAM:PF15413	PFscan:PS50003
ProteinID:CDX75169	ProteinID:CDX75169.1	SEG:seg	SMART:SM00233	SUPFAM:SSF144000	SUPFAM:SSF50729
UniParc:UPI0004EDE7D5	MapMan:35.1	:	:	:	:

Description

BnaC09g25130D

Coordinates

chrLK031803:-:2021160..2023517

Molecular Weight (calculated)

65075.6 Da

IEP (calculated)

6.029

GRAVY (calculated)

-0.551

Length

572 amino acids

Sequence
(BLAST)

001: MVVFSSDQTI SNHPRTSFHM HPFCCVSDHS PSMPLPEQPP FGVTRSEPIM SRSASQSSNR QSSRNVLHSL SFNHQSDVAN RLGQRVLALP ALAIREPPVD
101: VKINDIVGNG IAGILHKWVN YGRGWRPRWF VLQDGVLSYY KIHGPDKIFV SPETEKGSKV IGEESARMIS RHDKHGGSSA ASQLRRKPFG EVHLKVSSVR
201: ESRSDDKRFS IFTGTKRLHL RAETREDRAT WVEALLAIKD MFPRMSNSEL MAPIDNLAMS TEKLRQRLVD EGVSELAIQD CEQIMRSEFS ALQSQLVLLK
301: QKQWLLIDTL RHLETEKVDL ENTVVDESQR HTENEGPNDL RNEKFSEGTA TESDDENERG DAETDEEDHT FFDTRDFLSS SSFKSSSSGF RTSSFSSDDD
401: GFGSEDDIDP SIKSVGFNYP RVKRRKSLPD PVEKEKSVSL WSMIKDNIGK DLTKVCLPVY FNEPLSSLQK CFEDLEYSYL LDRAFEWGKR GNTLMRILNV
501: AAFAVSGYAS TEGRICKPFN PLLGETYEAD YPDKGLRFFS EKAESSMSMF CYEQFIPRFL LLFWGTFLNQ FL

Best Arabidopsis Sequence Match ( AT4G08180.1 )
(BLAST)

001: MHPFCCVTTV SDHSPSMPPL PEPQPPLPNY AADFGSARSE PIITRSASQS YNHSGQFNNN LIHSLSFNHH QSDVTDRLGQ RVLALPAAVR EPPVDVKIND
101: IVGNGIAGIL YKWVNYGRGW RPRWFVLQDG VLSYYKIHGP DKIFVSPETE KGSKVIGDES ARMISRHNRR GGSSSSCQLR RKPFGEVHLK VSSVRESRSD
201: DKRFSIFTGT KRLHLRAETR EDRTTWVEAL QAVKDMFPRM SNSELMAPTN NLAMSTEKIR LRLIEEGVSE LAIQDCEQIM KSEFSALQSQ LVLLKQKQWL
301: LIDTLRQLET EKVDLENTVV DESQRQADNG CSGELRHEKF SEGTATESDD DNERGDAAEE EFDEEENTFF DTRDFLSSSS FKSSGSGFRT SSFSSDEDGF
401: ESEDDIDPSI KSIGCNYPRV KRRKNLPDPV EKEKSVSLWS MIKDNIGKDL TKVCLPVYFN EPLSSLQKCF EDLEYSYLLD RAFEYGKRGN SLMRILNVAA
501: FAVSGYASTE GRICKPFNPL LGETYEADYP DKGLRFFSEK VSHHPMVVAC HCDGTGWKFW GDSNLRSKFW GRSIQLDPVG VLTLQFDDGE ILQWSKVTTS
601: IYNLILGKLY CDHYGTMRIE GSAEYSCKLK FKEQSIIDRN PHQVHGIVQN KSGKTVATMF GKWDESIHFV TGDCSGKGKL SEDMSGAQLL WKRSKPPGNA
701: TKYNLTRFAI TLNELTPGLK ERLPPTDSRL RPDQRYLENG EFEMANTEKL RLEQRQRQAR KMQERGWKPR WFMKEKGSES YRYKGGYWEA REDGSWVDCP
801: DIFGHIDSDQ QMIE

Arabidopsis Description

ORP1COxysterol-binding protein-related protein 1C [Source:UniProtKB/Swiss-Prot;Acc:Q8L751]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.