CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19393	Canola	cytosol	95.87	95.5
Bra019814.1-P	Field mustard	cytosol	99.1	93.77
HORVU0Hr1G010630.1	Barley	cytosol	11.48	84.76
AT1G13170.2	Thale cress	cytosol	90.58	83.87
VIT_01s0137g00290.t01	Wine grape	cytosol	75.35	73.37
GSMUA_Achr6P06750_001	Banana	cytosol	69.03	70.67
CDY51776	Canola	golgi	16.9	70.43
GSMUA_Achr9P02070_001	Banana	cytosol	68.26	70.35
KRH31371	Soybean	plastid	74.45	70.02
PGSC0003DMT400027973	Potato	cytosol	72.39	69.95
Solyc05g013960.2.1	Tomato	cytosol	72.13	69.79
KRG97509	Soybean	plastid	74.06	69.74
Os12t0285600-01	Rice	cytosol	66.71	68.39
Zm00001d030609_P002	Maize	cytosol	63.87	66.62
TraesCS5D01G120100.1	Wheat	cytosol	64.0	66.49
TraesCS5A01G117800.1	Wheat	cytosol	63.87	66.44
KXG23396	Sorghum	cytosol	63.23	66.4
TraesCS5B01G116700.1	Wheat	cytosol	63.87	66.27
CDX75168	Canola	endoplasmic reticulum	40.13	62.32
CDY59861	Canola	endoplasmic reticulum	39.23	60.92
CDY34011	Canola	nucleus, plastid	57.42	56.76
CDX83144	Canola	nucleus, plastid	57.16	56.51
CDY21272	Canola	nucleus	48.39	54.03
CDX76366	Canola	cytosol	49.16	52.84
CDX79161	Canola	cytosol	49.42	52.68
CDX82950	Canola	cytosol	49.42	52.68
CDY42177	Canola	cytosol	48.65	49.48
CDX75169	Canola	plastid	34.71	47.03
CDX90832	Canola	nucleus	48.77	44.52
CDY14648	Canola	plastid	12.9	38.76
CDY64064	Canola	plastid	12.9	38.76
CDY44693	Canola	cytosol, plastid	17.55	29.96
CDY07917	Canola	cytosol	17.03	29.73
CDX73970	Canola	cytosol	17.03	29.73
CDY41621	Canola	cytosol, plastid	17.29	29.58
CDY22188	Canola	nucleus	6.45	28.41
CDY33036	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	16.65	28.23
CDX80271	Canola	cytosol	16.52	27.95
CDY10468	Canola	cytosol	16.0	27.37
CDY40331	Canola	cytosol, plastid	15.87	27.15

Protein Annotations

EnsemblPlants:CDX98007	EnsemblPlantsGene:GSBRNA2T00105368001	Gene3D:2.40.160.120	InterPro:IPR001849	InterPro:OSBP_sf	InterPro:Oxysterol-bd
InterPro:PH_domain	ncoils:Coil	PANTHER:PTHR10972	PANTHER:PTHR10972:SF67	PFAM:PF01237	PFAM:PF15413
PFscan:PS50003	ProteinID:CDX98007	ProteinID:CDX98007.1	SEG:seg	SMART:SM00233	SUPFAM:SSF144000
SUPFAM:SSF50729	UniParc:UPI0004EEF37D	MapMan:35.1	:	:	:

Description

BnaA06g07580D

Coordinates

chrLK031902:+:517292..520913

Molecular Weight (calculated)

87805.5 Da

IEP (calculated)

5.883

GRAVY (calculated)

-0.617

Length

775 amino acids

Sequence
(BLAST)

001: MNPLCCIAPV SIDDRTNPVI AKPALSSEDV NLEGKDSTSN GGFFFGNGVG GAAGVAGIMY KWTHYGKGWR ARWFELEDGV LSYYKIHGPD KIVMNPAREK
101: GVRVIGEDFG GSSNKLGAGA ASRPCKPFGE VHLKVSSIRA SKSDDKRLTI FTGTKTLHLR CVSRENRATW VEALQVAKDL FPRVPSGDIL PCEDAVVSTE
201: KLRERLLQEG IGENLVKDCE TIMLSEVSNL QNRLKVLTQK HLILLDTLRQ LETEKIELET TVVDETKEHD SCCGQGRRFS DFYSVVSEVS ASDSEADNES
301: NDGVDVESDE DDVPFFDTND ILSADALRSA SYRSREAEGN GSIYDKDSFF SDRLQAPVRI PQYPYVRRRD NLPEPKEKEK PVGLWSIIKE NIGKDLSGVC
401: LPVYFNEPLS SLQKCFEDLE YSYLIDRALE WGKQGNELMR LLNIAAFAVS GYASTEGRQC KPFNPLLGET YEADYPDKGL RFFSEKASQP THLSPLLLQE
501: FHHPMIVACH CEGQGWNFWG DSNIKGKFWG RSIQLDPVGV LTLKFDDGET YQWSKVTTSI YNIILGKLYC DHYGTMRIKG GGNYSCRLKF KEQSVIDRNP
601: RQVHGFVQDN RTGEKVAILI GKWDEAMYYV LGDPTTKPKG YDPMTEAVLL WERDKSPTKT RYNLSPFAIS LNEITPGMMD KLPPTDSRLR PDQRHLENGE
701: YEAANAEKLR LEQLQRQARR LQEKGWKPRW FEKDEEGNYR YVGGYWEARE KKDWDKITDI FKKQQQQRNS VSSSS

Best Arabidopsis Sequence Match ( AT1G13170.1 )
(BLAST)

001: MNPLCCIAPV SIDDRTNPVV AKSSNHHLGL EAIPVSKHAS KPSFSTQASW ISQDQLERLS SEVVDDVNLD GKDASSSSNK GCFFFGNCVG AGAGVAGIMY
101: KWVNYGKGWR ARWFELEDGV LSYYKIHGPD KIVMNPSREK GVRVIGEESV RYIRKASCGS SNRLGASAVA ASRPCKPFGE IHLKVSSIRA SKSDDKRLAI
201: FTGTKTLHLR CVSKENRAAW VEAFQVAKDL FPRVASGDIL PSEDAVVSTE KLREKLLQEG VGETVVKDCE AIMLSEVSVL QNRLKVLTHK HIILLDTLRQ
301: LETEKIELEA TVVDETKEHD SCCGQGRRFS DFYSVMSEVS ASDSEADNES QDGADVESDE DDVPYFDTND ILSAEAMRSA SYRSREAEGN GSIYDKDPFF
401: SDRLQIPARI PQYPYVRRRD NLPEPKEKEK PVGLWSIIKE NIGKDLSGVC LPVYFNEPLS SLQKCFEDLE YSYLIDRALE WGKQGNELMR ILNIAAFAVS
501: GYASTEGRQC KPFNPLLGET YEADYPDKGL RFFSEKVSHH PMIVACHCEG QGWNFWGDSN IKGKFWGRSI QLDPVGVLTL KFDDGEIYQW SKVTTSIYNI
601: ILGKLYCDHY GTMRIKGGSN YSCRLKFKEQ SVIDRNPRQV HGFVQDNRTG EKVAILIGKW DEAMYYVLGD PTTKPKGYDP MTEAVLLWER DKSPTKTRYN
701: LSPFAISLNE ITPGMIDKLP PTDSRLRPDQ RHLENGEYES ANAEKLRLEQ LQRQARRLQE KGWKPRWFEK DEEGNYRYLG GYWEAREKKD WDRITDIFKK
801: QQQRNSLSSS SSSTFL

Arabidopsis Description

ORP1DOSBP(Oxysterol binding protein)-related protein 1D [Source:UniProtKB/TrEMBL;Acc:F4HP28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.