CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029757.1-P	Field mustard	cytosol, plastid	99.34	99.12
CDY44693	Canola	cytosol, plastid	99.34	99.12
CDY07917	Canola	cytosol	93.6	95.5
CDX73970	Canola	cytosol	93.16	95.05
AT3G09300.1	Thale cress	nucleus, plastid	96.03	94.98
CDY22188	Canola	nucleus	35.76	92.05
CDY10468	Canola	cytosol	85.21	85.21
CDY40331	Canola	cytosol, plastid	84.77	84.77
CDX80271	Canola	cytosol	79.69	78.82
CDY33036	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	79.25	78.56
CDX75168	Canola	endoplasmic reticulum	28.48	25.85
CDY59861	Canola	endoplasmic reticulum	28.04	25.45
CDY51776	Canola	golgi	9.05	22.04
CDY34011	Canola	nucleus, plastid	31.57	18.24
CDY21272	Canola	nucleus	27.81	18.16
CDX83144	Canola	nucleus, plastid	31.35	18.11
CDX76366	Canola	cytosol	28.7	18.03
CDX82950	Canola	cytosol	28.04	17.47
CDX79161	Canola	cytosol	28.04	17.47
CDY42177	Canola	cytosol	29.14	17.32
CDX98007	Canola	cytosol	29.58	17.29
CDY19393	Canola	cytosol	29.58	17.22
CDX90832	Canola	nucleus	27.81	14.84
CDX75169	Canola	plastid	13.24	10.49
CDY14648	Canola	plastid	1.32	2.33
CDY64064	Canola	plastid	1.32	2.33

Protein Annotations

EnsemblPlants:CDY41621	EnsemblPlantsGene:GSBRNA2T00073274001	Gene3D:1.20.120.1290	Gene3D:2.40.160.120	InterPro:OSBP_sf	InterPro:Oxysterol-bd
InterPro:Oxysterol-bd_CS	PANTHER:PTHR10972	PANTHER:PTHR10972:SF136	PFAM:PF01237	ProteinID:CDY41621	ProteinID:CDY41621.1
ScanProsite:PS01013	SUPFAM:SSF144000	UniParc:UPI0004EE018C	UniProt:A0A078HV86	MapMan:5.8.1.1	:

Description

BnaC05g43580DBnaC05g43580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HV86]

Coordinates

chrLK032501:-:255850..258146

Molecular Weight (calculated)

51570.5 Da

IEP (calculated)

4.769

GRAVY (calculated)

-0.665

Length

453 amino acids

Sequence
(BLAST)

001: MAPNDPKNGG GFFASLASSI SNLGSAMTKS VNGLVGYEGL EVINPEGSTE DAAEEANRGR WKQEDRDGYW KMMQKYIGSD VTSMVTLPVI IFEPMTMLQK
101: MAELMEYSHL LDMADKTDDP YMRMVYASSW AISVYYAFQR TWKPFNPILG ETYEMANYNG VNFISEQVSH HPPMSAGHAE NEHFTYDCTS KLKTKFLGNS
201: IDVYPVGRTR VTLKRDGVVL DLVPPLTKVH NLIFGRTWVD SPGEMIMTNL TTGDKVVLYF QPCGWFGSGR YEVDGYVYNA SEEPKILMTG KWNESMSYQQ
301: CDGEGEPLPG TELKEVWKLA DVPKDDKYQY THFAHKINSF DTAPKKLLPS DSRLRPDRYA LEMGDMSKSG NEKSSLEERQ RAEKRTREEK GQSFTPKWFD
401: ITEEVTPTPW GDLEVYQFNA KYSEHREAAD SSEDNTDPKS IQFNPWQFQD LST

Best Arabidopsis Sequence Match ( AT3G09300.1 )
(BLAST)

001: MAPNDPKKAV GGGGSGFFAS LASSISNLGS AMTKSVNGLV PYEGLEVINP EGSTDDAEEE ASRGRWKQED RDGYWKMMQK YIGSDVTSMV TLPVIIFEPM
101: TMLQKMAELM EYSHLLDMAD KTEDPYLRMV YASSWAISVY YAFQRTWKPF NPILGETYEM ANYNGVNFIS EQVSHHPPMS AGHAENEHFT YDCTSKLKTK
201: FLGNSIDVYP VGRTRVTLKR DGVVLDLVPP LTKVHNLIFG RTWVDSPGEM IMTNQTTGDK VVLYFQPCGW FGSGRYEVDG YVYNASEEPK ILMTGKWNES
301: MSYQPCDGEG EPLPGTELKE VWKLADVPKD DKYQYTHFAH KINSFDTAPK KLLPSDSRLR PDRYALEMGD MSKSGYEKSS MEERQRAEKR TREEKGQAFT
401: PKWFDVTEEV TATPWGDLEV YQFNGKYSEH RAAADNSEDN TDPKSIQFNP WQFQDLST

Arabidopsis Description

ORP3BORP3B [Source:UniProtKB/TrEMBL;Acc:A0A178VKM3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.