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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • nucleus 3
  • plastid 2
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY44693 Canola cytosol, plastid 95.2 96.04
Bra029757.1-P Field mustard cytosol, plastid 95.2 96.04
CDY41621 Canola cytosol, plastid 94.98 96.03
Bra034064.1-P Field mustard cytosol, plastid 90.17 94.08
CDY07917 Canola cytosol 89.74 92.57
CDX73970 Canola cytosol 89.3 92.12
Bra001317.1-P Field mustard cytosol 89.3 92.12
CDY22188 Canola nucleus 34.93 90.91
AT5G02100.1 Thale cress cytosol, plastid 88.43 89.4
AT5G59420.1 Thale cress cytosol, plastid 78.38 78.56
AT2G31030.1 Thale cress cytosol 26.86 25.15
AT4G12460.7 Thale cress cytosol 27.51 18.16
AT4G22540.5 Thale cress cytosol 28.17 17.89
AT2G31020.1 Thale cress plastid 28.6 16.84
AT4G08180.4 Thale cress cytosol 29.04 16.34
AT1G13170.2 Thale cress cytosol 28.38 15.53
AT1G77730.1 Thale cress plastid 2.18 3.77
Protein Annotations
Gene3D:1.20.120.1290Gene3D:2.40.160.120MapMan:5.8.1.1EntrezGene:820086UniProt:A0A178VKM3ProteinID:AAF14027.1
ProteinID:AEE74748.1ArrayExpress:AT3G09300EnsemblPlantsGene:AT3G09300RefSeq:AT3G09300TAIR:AT3G09300RefSeq:AT3G09300-TAIR-G
EnsemblPlants:AT3G09300.1TAIR:AT3G09300.1EMBL:AY062703EMBL:AY093373Unigene:At.48636GO:GO:0003674
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829
GO:GO:0006810GO:GO:0006869GO:GO:0008150GO:GO:0008289RefSeq:NP_187541.1ProteinID:OAP06919.1
Symbol:ORP3BInterPro:OSBP_sfInterPro:Oxysterol-bdInterPro:Oxysterol-bd_CSPFAM:PF01237PO:PO:0000013
PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001016PO:PO:0001017PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025195PO:PO:0025281ScanProsite:PS01013PANTHER:PTHR10972PANTHER:PTHR10972:SF136UniProt:Q9SR33
SUPFAM:SSF144000UniParc:UPI00000A1EADSEG:seg:::
Description
ORP3BORP3B [Source:UniProtKB/TrEMBL;Acc:A0A178VKM3]
Coordinates
chr3:+:2857847..2860668
Molecular Weight (calculated)
51959.0 Da
IEP (calculated)
4.821
GRAVY (calculated)
-0.651
Length
458 amino acids
Sequence
(BLAST)
001: MAPNDPKKAV GGGGSGFFAS LASSISNLGS AMTKSVNGLV PYEGLEVINP EGSTDDAEEE ASRGRWKQED RDGYWKMMQK YIGSDVTSMV TLPVIIFEPM
101: TMLQKMAELM EYSHLLDMAD KTEDPYLRMV YASSWAISVY YAFQRTWKPF NPILGETYEM ANYNGVNFIS EQVSHHPPMS AGHAENEHFT YDCTSKLKTK
201: FLGNSIDVYP VGRTRVTLKR DGVVLDLVPP LTKVHNLIFG RTWVDSPGEM IMTNQTTGDK VVLYFQPCGW FGSGRYEVDG YVYNASEEPK ILMTGKWNES
301: MSYQPCDGEG EPLPGTELKE VWKLADVPKD DKYQYTHFAH KINSFDTAPK KLLPSDSRLR PDRYALEMGD MSKSGYEKSS MEERQRAEKR TREEKGQAFT
401: PKWFDVTEEV TATPWGDLEV YQFNGKYSEH RAAADNSEDN TDPKSIQFNP WQFQDLST
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.