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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • plastid 3
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:cytosol
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX98007 Canola cytosol 83.87 90.58
Bra019814.1-P Field mustard cytosol 88.05 89.99
CDY19393 Canola cytosol 83.39 89.72
HORVU0Hr1G010630.1 Barley cytosol 10.63 84.76
VIT_01s0137g00290.t01 Wine grape cytosol 72.52 76.26
KRH31371 Soybean plastid 71.21 72.33
KRG97509 Soybean plastid 70.97 72.17
PGSC0003DMT400027973 Potato cytosol 69.06 72.07
Solyc05g013960.2.1 Tomato cytosol 68.58 71.66
GSMUA_Achr9P02070_001 Banana cytosol 64.04 71.28
GSMUA_Achr6P06750_001 Banana cytosol 64.04 70.81
CDY51776 Canola golgi 15.53 69.89
Os12t0285600-01 Rice cytosol 62.72 69.44
TraesCS5D01G120100.1 Wheat cytosol 61.05 68.5
TraesCS5A01G117800.1 Wheat cytosol 60.93 68.46
TraesCS5B01G116700.1 Wheat cytosol 60.93 68.27
Zm00001d030609_P002 Maize cytosol 59.98 67.56
KXG23396 Sorghum cytosol 58.9 66.8
AT2G31030.1 Thale cress cytosol 34.53 59.1
AT2G31020.1 Thale cress plastid 52.81 56.81
AT4G08180.4 Thale cress cytosol 53.64 55.16
AT4G12460.7 Thale cress cytosol 44.56 53.75
AT4G22540.5 Thale cress cytosol 45.88 53.26
AT1G77730.1 Thale cress plastid 12.9 40.75
AT5G59420.1 Thale cress cytosol, plastid 15.53 28.45
AT3G09300.1 Thale cress nucleus, plastid 15.53 28.38
AT5G02100.1 Thale cress cytosol, plastid 15.05 27.81
Protein Annotations
Gene3D:2.40.160.120MapMan:35.1EntrezGene:837875ProteinID:AEE28979.1ArrayExpress:AT1G13170EnsemblPlantsGene:AT1G13170
RefSeq:AT1G13170TAIR:AT1G13170RefSeq:AT1G13170-TAIR-GEnsemblPlants:AT1G13170.2TAIR:AT1G13170.2Unigene:At.28266
ncoils:CoilUniProt:F4HP28InterPro:IPR001849RefSeq:NP_001184980.1Symbol:ORP1DInterPro:OSBP_sf
InterPro:Oxysterol-bdPFAM:PF01237PFAM:PF15413InterPro:PH_domainPO:PO:0000013PO:PO:0000037
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PFscan:PS50003PANTHER:PTHR10972
PANTHER:PTHR10972:SF67SMART:SM00233SUPFAM:SSF144000SUPFAM:SSF50729UniParc:UPI0001E92ADDSEG:seg
Description
ORP1DOSBP(Oxysterol binding protein)-related protein 1D [Source:UniProtKB/TrEMBL;Acc:F4HP28]
Coordinates
chr1:-:4488533..4492587
Molecular Weight (calculated)
95033.3 Da
IEP (calculated)
6.782
GRAVY (calculated)
-0.544
Length
837 amino acids
Sequence
(BLAST)
001: MNPLCCIAPV SIDDRTNPVV AKSSNHHLGL EAIPVSKHAS KPSFSTQASW ISQDQLERLS SEVVDDVNLD GKDASSSSNK GCFFFGNCVG AGAGVAGIMY
101: KWVNYGKGWR ARWFELEDGV LSYYKIHGPD KIVMNPSREK GVRVIGEESV RYIRKASCGS SNRLGASAVA ASRPCKPFGE IHLKVSSIRA SKSDDKRLAI
201: FTGTKTLHLR CVSKENRAAW VEAFQVAKDL FPRVASGDIL PSEDAVVSTE KLREKLLQEG VGETVVKDCE AIMLSEVSVL QNRLKVLTHK HIILLDTLRQ
301: LETEKIELEA TVVDETKEHD SCCGQGRRFS DFYSVMSEVS ASDSEADNES QDGADVESDE DDVPYFDTND ILSAEAMRSA SYRSREAEGN GSIYDKDPFF
401: SDRLQIPARI PQYPYVRRRD NLPEPKEKEK PVGLWSIIKE NIGKDLSGVC LPVYFNEPLS SLQKCFEDLE YSYLIDRALE WGKQVRSFSL FLILVRYRKE
501: WFILQGNELM RILNIAAFAV SGYASTEGRQ CKPFNPLLGE TYEADYPDKG LRFFSEKVSH HPMIVACHCE GQGWNFWGDS NIKGKFWGRS IQLDPVGVLT
601: LKFDDGEIYQ WSKVTTSIYN IILGKLYCDH YGTMRIKGGS NYSCRLKFKE QSVIDRNPRQ VHGFVQDNRT GEKVAILIGK WDEAMYYVLG DPTTKPKGYD
701: PMTEAVLLWE RDKSPTKTRY NLSPFAISLN EITPGMIDKL PPTDSRLRPD QRHLENGEYE SANAEKLRLE QLQRQARRLQ EKGWKPRWFE KDEEGNYRYL
801: GGYWEAREKK DWDRITDIFK KQQQRNSLSS SSSSTFL
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.