Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008330.1-P | Field mustard | plastid | 84.91 | 87.21 |
| CDY14648 | Canola | plastid | 84.91 | 87.21 |
| CDY64064 | Canola | plastid | 84.91 | 87.21 |
| AT4G08180.4 | Thale cress | cytosol | 49.81 | 16.22 |
| AT2G31020.1 | Thale cress | plastid | 47.17 | 16.07 |
| AT1G13170.2 | Thale cress | cytosol | 40.75 | 12.9 |
| AT4G22540.5 | Thale cress | cytosol | 34.72 | 12.76 |
| AT4G12460.7 | Thale cress | cytosol | 32.08 | 12.25 |
| AT2G31030.1 | Thale cress | cytosol | 4.91 | 2.66 |
| AT5G59420.1 | Thale cress | cytosol, plastid | 4.53 | 2.63 |
| AT5G02100.1 | Thale cress | cytosol, plastid | 3.77 | 2.21 |
| AT3G09300.1 | Thale cress | nucleus, plastid | 3.77 | 2.18 |
Protein Annotations
| MapMan:35.1 | EntrezGene:844109 | ProteinID:AAG51621.1 | ProteinID:AEE36014.1 | ArrayExpress:AT1G77730 | EnsemblPlantsGene:AT1G77730 |
| RefSeq:AT1G77730 | TAIR:AT1G77730 | RefSeq:AT1G77730-TAIR-G | EnsemblPlants:AT1G77730.1 | TAIR:AT1G77730.1 | InterPro:IPR001849 |
| RefSeq:NP_177896.1 | InterPro:Oxysterol-bd | PFAM:PF15413 | InterPro:PH_domain | PO:PO:0000084 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0007616 | PO:PO:0009046 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS50003 | PANTHER:PTHR10972 | PANTHER:PTHR10972:SF138 | UniProt:Q9CA21 | SMART:SM00233 | SUPFAM:SSF50729 |
| UniParc:UPI00000A44B6 | : | : | : | : | : |
Description
Pleckstrin homology (PH) domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CA21]
Coordinates
chr1:+:29214220..29215832
Molecular Weight (calculated)
29891.5 Da
IEP (calculated)
10.166
GRAVY (calculated)
-0.597
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPLAAKSN LTTTRSASLN IPHSTRTNHN HDLRYSLSAG PRTNEDRPAS GNGVAGILYK WVNYGQGWKR RWFVLQDGVL SYYRIHGPDK ISLSVEMDRR
101: SKLIGGESLR FICRHSKRGD VHSPGKPLGQ IHLKVSSIGQ SISDGKRFTV FTGTKSLHLR AATSEDRASW IEALKAVKET FPRMSNEELM ASTTNVSVST
201: DKLRQRLMEE EVDETIIKDC EDIMKNNFLA LHDEVMSLKR YQYHLIDSLK NVSNSPIRPS NQSFS
101: SKLIGGESLR FICRHSKRGD VHSPGKPLGQ IHLKVSSIGQ SISDGKRFTV FTGTKSLHLR AATSEDRASW IEALKAVKET FPRMSNEELM ASTTNVSVST
201: DKLRQRLMEE EVDETIIKDC EDIMKNNFLA LHDEVMSLKR YQYHLIDSLK NVSNSPIRPS NQSFS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.