Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000639.1-P | Field mustard | nucleus, plastid | 86.36 | 89.78 |
| CDX83144 | Canola | nucleus, plastid | 86.24 | 89.54 |
| CDY34011 | Canola | nucleus, plastid | 85.87 | 89.16 |
| CDX75168 | Canola | endoplasmic reticulum | 53.32 | 86.97 |
| CDY59861 | Canola | endoplasmic reticulum | 52.58 | 85.77 |
| Bra039764.1-P | Field mustard | endoplasmic reticulum | 52.46 | 85.57 |
| HORVU6Hr1G024620.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 7.99 | 84.42 |
| CDX75169 | Canola | plastid | 57.74 | 82.17 |
| AT2G31020.1 | Thale cress | plastid | 77.89 | 81.49 |
| HORVU2Hr1G031380.1 | Barley | cytosol | 33.05 | 79.12 |
| VIT_18s0001g03790.t01 | Wine grape | cytosol | 71.99 | 76.01 |
| KRH53184 | Soybean | plastid | 72.85 | 75.16 |
| KRH16599 | Soybean | plastid | 72.11 | 74.87 |
| KRH64734 | Soybean | plastid | 71.99 | 74.84 |
| KRH18807 | Soybean | plastid | 72.24 | 74.71 |
| AT2G31030.1 | Thale cress | cytosol | 44.59 | 74.23 |
| HORVU3Hr1G049220.1 | Barley | cytosol | 16.09 | 73.6 |
| PGSC0003DMT400074661 | Potato | plastid | 70.02 | 72.06 |
| Solyc11g013190.1.1 | Tomato | nucleus, plastid | 71.5 | 71.76 |
| OQU91126 | Sorghum | plastid | 68.3 | 69.33 |
| TraesCS4A01G271700.1 | Wheat | plastid | 67.44 | 68.37 |
| GSMUA_Achr10P... | Banana | plastid | 68.18 | 68.27 |
| Zm00001d033669_P003 | Maize | plastid | 68.18 | 67.68 |
| TraesCS4D01G039500.1 | Wheat | plastid | 67.44 | 67.11 |
| TraesCS4B01G042300.2 | Wheat | plastid | 67.08 | 66.99 |
| GSMUA_Achr2P07260_001 | Banana | plastid | 57.74 | 66.67 |
| Zm00001d013470_P007 | Maize | plastid | 66.58 | 66.34 |
| AT4G12460.7 | Thale cress | cytosol | 48.65 | 57.06 |
| AT4G22540.5 | Thale cress | cytosol | 49.63 | 56.03 |
| AT1G13170.2 | Thale cress | cytosol | 55.16 | 53.64 |
| AT1G77730.1 | Thale cress | plastid | 16.22 | 49.81 |
| GSMUA_Achr3P21140_001 | Banana | nucleus | 71.01 | 40.88 |
| AT5G02100.1 | Thale cress | cytosol, plastid | 16.34 | 29.36 |
| AT3G09300.1 | Thale cress | nucleus, plastid | 16.34 | 29.04 |
| AT5G59420.1 | Thale cress | cytosol, plastid | 16.09 | 28.67 |
Protein Annotations
| Gene3D:2.40.160.120 | MapMan:35.1 | EntrezGene:826368 | ProteinID:AEE82605.1 | ProteinID:AEE82606.1 | EMBL:AK220993 |
| EMBL:AK221773 | ProteinID:ANM66076.1 | ArrayExpress:AT4G08180 | EnsemblPlantsGene:AT4G08180 | RefSeq:AT4G08180 | TAIR:AT4G08180 |
| RefSeq:AT4G08180-TAIR-G | EnsemblPlants:AT4G08180.4 | EMBL:AY139750 | Unigene:At.43648 | EMBL:BX826423 | ProteinID:CAB45788.1 |
| ProteinID:CAB81154.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006810 | GO:GO:0006869 |
| GO:GO:0008150 | GO:GO:0008289 | InterPro:IPR001849 | RefSeq:NP_001319881.1 | RefSeq:NP_192558.2 | RefSeq:NP_974518.1 |
| Symbol:ORP1C | InterPro:OSBP_sf | InterPro:Oxysterol-bd | PFAM:PF01237 | PFAM:PF15413 | InterPro:PH_domain |
| PFscan:PS50003 | PANTHER:PTHR10972 | PANTHER:PTHR10972:SF100 | UniProt:Q8L751 | SMART:SM00233 | SUPFAM:SSF144000 |
| SUPFAM:SSF50729 | UniParc:UPI00000AAD85 | SEG:seg | : | : | : |
Description
ORP1COxysterol-binding protein-related protein 1C [Source:UniProtKB/Swiss-Prot;Acc:Q8L751]
Coordinates
chr4:+:5169484..5174107
Molecular Weight (calculated)
92769.1 Da
IEP (calculated)
6.478
GRAVY (calculated)
-0.683
Length
814 amino acids
Sequence
(BLAST)
(BLAST)
001: MHPFCCVTTV SDHSPSMPPL PEPQPPLPNY AADFGSARSE PIITRSASQS YNHSGQFNNN LIHSLSFNHH QSDVTDRLGQ RVLALPAAVR EPPVDVKIND
101: IVGNGIAGIL YKWVNYGRGW RPRWFVLQDG VLSYYKIHGP DKIFVSPETE KGSKVIGDES ARMISRHNRR GGSSSSCQLR RKPFGEVHLK VSSVRESRSD
201: DKRFSIFTGT KRLHLRAETR EDRTTWVEAL QAVKDMFPRM SNSELMAPTN NLAMSTEKIR LRLIEEGVSE LAIQDCEQIM KSEFSALQSQ LVLLKQKQWL
301: LIDTLRQLET EKVDLENTVV DESQRQADNG CSGELRHEKF SEGTATESDD DNERGDAAEE EFDEEENTFF DTRDFLSSSS FKSSGSGFRT SSFSSDEDGF
401: ESEDDIDPSI KSIGCNYPRV KRRKNLPDPV EKEKSVSLWS MIKDNIGKDL TKVCLPVYFN EPLSSLQKCF EDLEYSYLLD RAFEYGKRGN SLMRILNVAA
501: FAVSGYASTE GRICKPFNPL LGETYEADYP DKGLRFFSEK VSHHPMVVAC HCDGTGWKFW GDSNLRSKFW GRSIQLDPVG VLTLQFDDGE ILQWSKVTTS
601: IYNLILGKLY CDHYGTMRIE GSAEYSCKLK FKEQSIIDRN PHQVHGIVQN KSGKTVATMF GKWDESIHFV TGDCSGKGKL SEDMSGAQLL WKRSKPPGNA
701: TKYNLTRFAI TLNELTPGLK ERLPPTDSRL RPDQRYLENG EFEMANTEKL RLEQRQRQAR KMQERGWKPR WFMKEKGSES YRYKGGYWEA REDGSWVDCP
801: DIFGHIDSDQ QMIE
101: IVGNGIAGIL YKWVNYGRGW RPRWFVLQDG VLSYYKIHGP DKIFVSPETE KGSKVIGDES ARMISRHNRR GGSSSSCQLR RKPFGEVHLK VSSVRESRSD
201: DKRFSIFTGT KRLHLRAETR EDRTTWVEAL QAVKDMFPRM SNSELMAPTN NLAMSTEKIR LRLIEEGVSE LAIQDCEQIM KSEFSALQSQ LVLLKQKQWL
301: LIDTLRQLET EKVDLENTVV DESQRQADNG CSGELRHEKF SEGTATESDD DNERGDAAEE EFDEEENTFF DTRDFLSSSS FKSSGSGFRT SSFSSDEDGF
401: ESEDDIDPSI KSIGCNYPRV KRRKNLPDPV EKEKSVSLWS MIKDNIGKDL TKVCLPVYFN EPLSSLQKCF EDLEYSYLLD RAFEYGKRGN SLMRILNVAA
501: FAVSGYASTE GRICKPFNPL LGETYEADYP DKGLRFFSEK VSHHPMVVAC HCDGTGWKFW GDSNLRSKFW GRSIQLDPVG VLTLQFDDGE ILQWSKVTTS
601: IYNLILGKLY CDHYGTMRIE GSAEYSCKLK FKEQSIIDRN PHQVHGIVQN KSGKTVATMF GKWDESIHFV TGDCSGKGKL SEDMSGAQLL WKRSKPPGNA
701: TKYNLTRFAI TLNELTPGLK ERLPPTDSRL RPDQRYLENG EFEMANTEKL RLEQRQRQAR KMQERGWKPR WFMKEKGSES YRYKGGYWEA REDGSWVDCP
801: DIFGHIDSDQ QMIE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.