Factsheet for Bra000639.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83144	Canola	nucleus, plastid	99.87	99.74
CDY34011	Canola	nucleus, plastid	98.85	98.72
HORVU6Hr1G024620.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	8.56	87.01
AT4G08180.4	Thale cress	cytosol	89.78	86.36
Bra039764.1-P	Field mustard	endoplasmic reticulum	54.66	85.77
HORVU2Hr1G031380.1	Barley	cytosol	34.87	80.29
HORVU3Hr1G049220.1	Barley	cytosol	17.37	76.4
VIT_18s0001g03790.t01	Wine grape	cytosol	74.58	75.75
KRH16599	Soybean	plastid	74.33	74.23
KRH53184	Soybean	plastid	74.71	74.14
KRH18807	Soybean	plastid	74.2	73.82
KRH64734	Soybean	plastid	73.69	73.69
PGSC0003DMT400074661	Potato	plastid	72.67	71.93
Solyc11g013190.1.1	Tomato	nucleus, plastid	74.07	71.52
OQU91126	Sorghum	plastid	71.14	69.45
GSMUA_Achr10P...	Banana	plastid	70.75	68.14
TraesCS4A01G271700.1	Wheat	plastid	69.86	68.12
Zm00001d033669_P003	Maize	plastid	71.01	67.8
TraesCS4B01G042300.2	Wheat	plastid	69.6	66.87
TraesCS4D01G039500.1	Wheat	plastid	69.86	66.87
GSMUA_Achr2P07260_001	Banana	plastid	60.15	66.81
Zm00001d013470_P007	Maize	plastid	69.48	66.59
Bra000774.1-P	Field mustard	nucleus	50.83	57.35
Bra020844.1-P	Field mustard	plastid	51.09	55.33
Bra013624.1-P	Field mustard	cytosol	51.09	55.02
Bra019814.1-P	Field mustard	cytosol	57.22	54.7
Bra008330.1-P	Field mustard	plastid	16.35	49.61
GSMUA_Achr3P21140_001	Banana	nucleus	74.2	41.09
Bra001317.1-P	Field mustard	cytosol	17.88	31.53
Bra029757.1-P	Field mustard	cytosol, plastid	18.26	31.5
Bra034064.1-P	Field mustard	cytosol, plastid	16.73	29.84
Bra002568.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	17.11	29.32
Bra009613.1-P	Field mustard	nucleus	15.58	27.73

Protein Annotations

Gene3D:2.40.160.120	MapMan:35.1	EnsemblPlantsGene:Bra000639	EnsemblPlants:Bra000639.1	EnsemblPlants:Bra000639.1-P	ncoils:Coil
InterPro:IPR001849	UniProt:M4C8W1	InterPro:OSBP_sf	InterPro:Oxysterol-bd	PFAM:PF01237	PFAM:PF15413
InterPro:PH_domain	PFscan:PS50003	PANTHER:PTHR10972	PANTHER:PTHR10972:SF100	SMART:SM00233	SUPFAM:SSF144000
SUPFAM:SSF50729	UniParc:UPI000254020E	SEG:seg	:	:	:

Description

AT4G08180 (E=0.0) ORP1C | ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C); oxysterol binding / phosphoinositide binding

Coordinates

chrA03:-:12207518..12210981

Molecular Weight (calculated)

89303.9 Da

IEP (calculated)

6.654

GRAVY (calculated)

-0.732

Length

783 amino acids

Sequence
(BLAST)

001: MLSFCCVSTV SDHSLPMPLP EQPGVTRSEP IMTRSASHSQ SYNHHRHQSN RHPLHSLSFN HQSQPPPVDV KINDIVGNGI AGILHKWVNY GRGWRSRWFV
101: LQDGVLSYYK IHGPDKIFLS PESEKGSKVI GEESARMISS HHHNKHGASH LHRKPFGEVH LKVSSVRESR SDDKRFSIFT GTKRLHLRAD TREDRATWVE
201: ALQAVKDMFP RMSNSELMAP TNNLAMSTEK LRQRLIDEGV SELAIQDCEQ IMRSEFSALQ SQLVLLKQKQ WLLIDTLRQL ETEKVDLENT LVDESQRQAV
301: NGGSIDLRHE KCSEGTATES DDDHERGDAE TDEEDNTFFD TRDFLSSSSF KSSGSDFRTS SFSSDGDGVG SSEDDIDPSI KSIGCDYPHV KRRKSLPEPV
401: EKEKSVSLWS MIKDNIGKDL TKVCLPVYFN EPLSSLQKCF EDLEYSYLLD RAFEWGKRGN SLMRILNVAA FAVSGYASTE GRICKPFNPL LGETYEADYP
501: DKGLRFFSEK VSHHPMVVAC HCDGTGWKFW ADSNLKSKFW GRSIQLDPVG VLTLQFDDGE ILQWSKVTTS IYNLILGKLY CDHYGTMRIE GSAEYSCKLK
601: FKEQSIIDRN PHQVHGIVQD KSGKTVATMF GKWDESMHYV TGDCSGKGKL SEDMSGAQLL WKRSKPPGNP TKYNLTRFAM TLNELTPGLK EKLPPTDSRL
701: RPDQRYLENG EFEMANEEKL RLEQRQRQAR KMQERGWKPK WFTKEEGSEA YRYKGGYWEA RESGSWEDCP DIFGHIDSEQ QTE

Best Arabidopsis Sequence Match ( AT4G08180.1 )
(BLAST)

001: MHPFCCVTTV SDHSPSMPPL PEPQPPLPNY AADFGSARSE PIITRSASQS YNHSGQFNNN LIHSLSFNHH QSDVTDRLGQ RVLALPAAVR EPPVDVKIND
101: IVGNGIAGIL YKWVNYGRGW RPRWFVLQDG VLSYYKIHGP DKIFVSPETE KGSKVIGDES ARMISRHNRR GGSSSSCQLR RKPFGEVHLK VSSVRESRSD
201: DKRFSIFTGT KRLHLRAETR EDRTTWVEAL QAVKDMFPRM SNSELMAPTN NLAMSTEKIR LRLIEEGVSE LAIQDCEQIM KSEFSALQSQ LVLLKQKQWL
301: LIDTLRQLET EKVDLENTVV DESQRQADNG CSGELRHEKF SEGTATESDD DNERGDAAEE EFDEEENTFF DTRDFLSSSS FKSSGSGFRT SSFSSDEDGF
401: ESEDDIDPSI KSIGCNYPRV KRRKNLPDPV EKEKSVSLWS MIKDNIGKDL TKVCLPVYFN EPLSSLQKCF EDLEYSYLLD RAFEYGKRGN SLMRILNVAA
501: FAVSGYASTE GRICKPFNPL LGETYEADYP DKGLRFFSEK VSHHPMVVAC HCDGTGWKFW GDSNLRSKFW GRSIQLDPVG VLTLQFDDGE ILQWSKVTTS
601: IYNLILGKLY CDHYGTMRIE GSAEYSCKLK FKEQSIIDRN PHQVHGIVQN KSGKTVATMF GKWDESIHFV TGDCSGKGKL SEDMSGAQLL WKRSKPPGNA
701: TKYNLTRFAI TLNELTPGLK ERLPPTDSRL RPDQRYLENG EFEMANTEKL RLEQRQRQAR KMQERGWKPR WFMKEKGSES YRYKGGYWEA REDGSWVDCP
801: DIFGHIDSDQ QMIE

Arabidopsis Description

ORP1COxysterol-binding protein-related protein 1C [Source:UniProtKB/Swiss-Prot;Acc:Q8L751]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.