Factsheet for PGSC0003DMT400074661

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 1
nucleus 3
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g013190.1.1	Tomato	nucleus, plastid	97.85	95.44
VIT_18s0001g03790.t01	Wine grape	cytosol	75.85	77.82
KRH16599	Soybean	plastid	74.72	75.38
KRH18807	Soybean	plastid	73.83	74.21
KRH53184	Soybean	plastid	73.83	74.02
KRH64734	Soybean	plastid	72.82	73.56
CDX75168	Canola	endoplasmic reticulum	46.4	73.55
CDX83144	Canola	nucleus, plastid	72.06	72.7
Bra000639.1-P	Field mustard	nucleus, plastid	71.93	72.67
CDY34011	Canola	nucleus, plastid	71.56	72.19
CDY59861	Canola	endoplasmic reticulum	45.39	71.94
Bra039764.1-P	Field mustard	endoplasmic reticulum	45.26	71.74
AT2G31020.1	Thale cress	plastid	69.53	70.69
AT4G08180.4	Thale cress	cytosol	72.06	70.02
AT2G31030.1	Thale cress	cytosol	42.23	68.3
CDX75169	Canola	plastid	46.27	63.99
PGSC0003DMT400029169	Potato	nucleus	59.54	60.85
PGSC0003DMT400020224	Potato	cytosol	48.55	58.81
PGSC0003DMT400012089	Potato	cytosol	51.71	56.26
PGSC0003DMT400027973	Potato	cytosol	55.88	55.11
PGSC0003DMT400028593	Potato	cytosol, plastid	18.33	28.83

Protein Annotations

EnsemblPlants:PGSC0003DMT400074661	EnsemblPlantsGene:PGSC0003DMG400029030	Gene3D:2.40.160.120	InterPro:IPR001849	InterPro:OSBP_sf	InterPro:Oxysterol-bd
InterPro:PH_domain	ncoils:Coil	PANTHER:PTHR10972	PANTHER:PTHR10972:SF100	PFAM:PF01237	PFAM:PF15413
PFscan:PS50003	PGSC:PGSC0003DMG400029030	SEG:seg	SMART:SM00233	SUPFAM:SSF144000	SUPFAM:SSF50729
UniParc:UPI000295C076	UniProt:M1CU07	MapMan:35.1	:	:	:

Description

Oxysterol-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029030]

Coordinates

chr11:+:10286577..10295399

Molecular Weight (calculated)

90364.3 Da

IEP (calculated)

7.915

GRAVY (calculated)

-0.741

Length

791 amino acids

Sequence
(BLAST)

001: MAPPPAPEFT RSADSLNRSA SGSYNHNWSA SNSNHHRHRS LTESSSSTPG IFTSLSRPPS MREVIQLTCA ASAGDQVKIN DIVGNGISGI LHKWVNYGKG
101: WRPRWFVLQD GVLSYYKIHG RDRIVVNSET EKGSKVIGEV SLRRISRNKT NATSQARRKP VGEVHLKVSS IRESRSDDRR FSIFTGTKRL HLRAETREDR
201: IAWMEALQAV KDMFPRMSNS ELMAPVDDVA ISTDKLRQQL LKEGVSESGI QESELIMRNE FASLQNQLML LKQKHRMLMD TLRQLETEKV DLENTVVDES
301: QRQCKEVGPS ARLRQDKYSE ASASESEDDN ERVDAAEEDT DDEENTFFDT KDFLSSSSFK SSGSDFRTSS FSSDDDDLYA YASDESVDPI IKYAGTKFPY
401: VKRRKKLPNP IEKEKGVSLW SMIKDNIGKD LTKVCLPVYF NEPLSSLQKS FEDLEYSYLL DRASEWGRRG DSLMRILNIA AFAVSAYAST EGRICKPFNP
501: LLGETYEAEY PDKGLRFFSE KVSHHPMIIA CHCEGTGWKF SGDSNLKSKF WGRSIQLDPV GILTLEFDDG EIFQWSKVTT SIYNLILGKL YCDHYGTMRI
601: QGNRNYSCKL KFKEQSIIDR NPHQVQGIVQ DRSGKTVATL FGKWDESMHY VNGDFSSGKG FDSLSEAHLL WKRSKPPKDP TRYNLTRFAI TMNELIPGLK
701: DKLPPTDSRL RPDQRCLENG EYDRANSEKL RLEERQRQAR KMQERGWKPQ WFAKEKGGDS YHYIGGYWEA REKGKWEACP DIFGHIPCDQ M

Best Arabidopsis Sequence Match ( AT4G08180.1 )
(BLAST)

001: MHPFCCVTTV SDHSPSMPPL PEPQPPLPNY AADFGSARSE PIITRSASQS YNHSGQFNNN LIHSLSFNHH QSDVTDRLGQ RVLALPAAVR EPPVDVKIND
101: IVGNGIAGIL YKWVNYGRGW RPRWFVLQDG VLSYYKIHGP DKIFVSPETE KGSKVIGDES ARMISRHNRR GGSSSSCQLR RKPFGEVHLK VSSVRESRSD
201: DKRFSIFTGT KRLHLRAETR EDRTTWVEAL QAVKDMFPRM SNSELMAPTN NLAMSTEKIR LRLIEEGVSE LAIQDCEQIM KSEFSALQSQ LVLLKQKQWL
301: LIDTLRQLET EKVDLENTVV DESQRQADNG CSGELRHEKF SEGTATESDD DNERGDAAEE EFDEEENTFF DTRDFLSSSS FKSSGSGFRT SSFSSDEDGF
401: ESEDDIDPSI KSIGCNYPRV KRRKNLPDPV EKEKSVSLWS MIKDNIGKDL TKVCLPVYFN EPLSSLQKCF EDLEYSYLLD RAFEYGKRGN SLMRILNVAA
501: FAVSGYASTE GRICKPFNPL LGETYEADYP DKGLRFFSEK VSHHPMVVAC HCDGTGWKFW GDSNLRSKFW GRSIQLDPVG VLTLQFDDGE ILQWSKVTTS
601: IYNLILGKLY CDHYGTMRIE GSAEYSCKLK FKEQSIIDRN PHQVHGIVQN KSGKTVATMF GKWDESIHFV TGDCSGKGKL SEDMSGAQLL WKRSKPPGNA
701: TKYNLTRFAI TLNELTPGLK ERLPPTDSRL RPDQRYLENG EFEMANTEKL RLEQRQRQAR KMQERGWKPR WFMKEKGSES YRYKGGYWEA REDGSWVDCP
801: DIFGHIDSDQ QMIE

Arabidopsis Description

ORP1COxysterol-binding protein-related protein 1C [Source:UniProtKB/Swiss-Prot;Acc:Q8L751]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.