Factsheet for VIT_01s0137g00290.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G010630.1	Barley	cytosol	10.93	82.86
KRG97509	Soybean	plastid	81.78	79.1
KRH31371	Soybean	plastid	81.41	78.64
PGSC0003DMT400027973	Potato	cytosol	79.15	78.55
Solyc05g013960.2.1	Tomato	cytosol	79.02	78.53
GSMUA_Achr9P02070_001	Banana	cytosol	71.61	75.8
CDX98007	Canola	cytosol	73.37	75.35
CDY19393	Canola	cytosol	73.62	75.32
GSMUA_Achr6P06750_001	Banana	cytosol	70.98	74.64
Os12t0285600-01	Rice	cytosol	69.47	73.15
Bra019814.1-P	Field mustard	cytosol	75.25	73.14
AT1G13170.2	Thale cress	cytosol	76.26	72.52
TraesCS5D01G120100.1	Wheat	cytosol	66.46	70.91
TraesCS5A01G117800.1	Wheat	cytosol	66.33	70.87
KXG23396	Sorghum	cytosol	65.7	70.87
Zm00001d030609_P002	Maize	cytosol	66.08	70.79
TraesCS5B01G116700.1	Wheat	cytosol	66.33	70.68
VIT_18s0001g03790.t01	Wine grape	cytosol	60.05	62.0
CDY51776	Canola	golgi	14.32	61.29
VIT_02s0154g00250.t01	Wine grape	mitochondrion	37.81	60.81
VIT_07s0031g02980.t01	Wine grape	plastid	55.78	57.89
VIT_02s0154g00240.t01	Wine grape	cytosol, nucleus	49.87	54.83
VIT_08s0007g00480.t01	Wine grape	cytosol	16.08	28.7
VIT_06s0004g04930.t01	Wine grape	cytosol	16.33	28.51

Protein Annotations

EntrezGene:100257862	wikigene:100257862	Gene3D:2.40.160.120	MapMan:35.1	EMBL:AM458711	ProteinID:CAN65635
ProteinID:CAN65635.1	ProteinID:CCB44013	ProteinID:CCB44013.1	ncoils:Coil	UniProt:F6GVJ4	EMBL:FN594954
InterPro:IPR001849	EntrezGene:LOC100257862	wikigene:LOC100257862	InterPro:OSBP_sf	InterPro:Oxysterol-bd	PFAM:PF01237
PFAM:PF15413	InterPro:PH_domain	PFscan:PS50003	PANTHER:PTHR10972	PANTHER:PTHR10972:SF67	SMART:SM00233
SUPFAM:SSF144000	SUPFAM:SSF50729	TIGR:TC53069	UniParc:UPI00019828BD	ArrayExpress:VIT_01s0137g00290	EnsemblPlantsGene:VIT_01s0137g00290
EnsemblPlants:VIT_01s0137g00290.t01	unigene:Vvi.16555	RefSeq:XP_002282089	RefSeq:XP_002282089.1	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:6820133..6830322

Molecular Weight (calculated)

90831.3 Da

IEP (calculated)

5.913

GRAVY (calculated)

-0.593

Length

796 amino acids

Sequence
(BLAST)

001: MNPLCCIAPV SIDRDRANPG PCQLGLESSV KNVNIGSKQG FSAQVSSINA ESDAVSHDVE DAFPEARDGK VFGAGGGVAG ILYKWVNYGK GWRSRWFVLE
101: DGVLSYYKIH GPDKILMSPA REKSLKVIGE DSLRCMKKNS WSNHHRLAGS AKQWKPFGEI HLKVSSIRAS KSDDKRLSIF TGTKTLHLRC ISREDRSAWI
201: EALQAAKDLF PRVLTSSDFA PSEDIVVSTE KLRLRLVQEG VGEVVIKDCE SIMLSELSEL QNQFKALQRK HIILLDTLRQ LETEKIELET TVVDETKERE
301: SYCGQGNRRF SDFYSIMSEG SGSDSDADNE SQDGVDVETD EDDIVFFDTN DFLSSESLRS ASYRSRETLG NGTLINNRDP FLSDHLHDEM EIRTVEYPYI
401: KRRDSLPEPK EKEKPVGLWS IIKDNIGKDL SGVCLPVYFN EPLSSLQKCF EDLEYSYLVD RAMEWGKQGN DLMRILNIAA FAVSGYASTE GRQCKPFNPL
501: LGETYEADYP DKGLRFFSEK VSHHPMIVAC HCEGRGWKFW ADSNLKGKFW GRSIQLDPVG VLTLQFDDDE TFQWSKVTTS IYNIILGKIY CDHYGTMRIK
601: GSGNYSCKLK FKEQSIIDRN PHQVHGFVQD NRTGEKVAML VGKWDEAMYY VLGDPTTKPK GYDPMTEAVL LWEREKFVTK TRYNLTPFAI SLNELTPGLL
701: EKLPPTDSRL RPDQRHLENG EYELANAEKL RLEHLQRQAR KLQERGWQPR WFRKDKEDGC YRYIGGYWET REKRYWDGIP NIFGQGSDSP SCLIEE

Best Arabidopsis Sequence Match ( AT1G13170.1 )
(BLAST)

001: MNPLCCIAPV SIDDRTNPVV AKSSNHHLGL EAIPVSKHAS KPSFSTQASW ISQDQLERLS SEVVDDVNLD GKDASSSSNK GCFFFGNCVG AGAGVAGIMY
101: KWVNYGKGWR ARWFELEDGV LSYYKIHGPD KIVMNPSREK GVRVIGEESV RYIRKASCGS SNRLGASAVA ASRPCKPFGE IHLKVSSIRA SKSDDKRLAI
201: FTGTKTLHLR CVSKENRAAW VEAFQVAKDL FPRVASGDIL PSEDAVVSTE KLREKLLQEG VGETVVKDCE AIMLSEVSVL QNRLKVLTHK HIILLDTLRQ
301: LETEKIELEA TVVDETKEHD SCCGQGRRFS DFYSVMSEVS ASDSEADNES QDGADVESDE DDVPYFDTND ILSAEAMRSA SYRSREAEGN GSIYDKDPFF
401: SDRLQIPARI PQYPYVRRRD NLPEPKEKEK PVGLWSIIKE NIGKDLSGVC LPVYFNEPLS SLQKCFEDLE YSYLIDRALE WGKQGNELMR ILNIAAFAVS
501: GYASTEGRQC KPFNPLLGET YEADYPDKGL RFFSEKVSHH PMIVACHCEG QGWNFWGDSN IKGKFWGRSI QLDPVGVLTL KFDDGEIYQW SKVTTSIYNI
601: ILGKLYCDHY GTMRIKGGSN YSCRLKFKEQ SVIDRNPRQV HGFVQDNRTG EKVAILIGKW DEAMYYVLGD PTTKPKGYDP MTEAVLLWER DKSPTKTRYN
701: LSPFAISLNE ITPGMIDKLP PTDSRLRPDQ RHLENGEYES ANAEKLRLEQ LQRQARRLQE KGWKPRWFEK DEEGNYRYLG GYWEAREKKD WDRITDIFKK
801: QQQRNSLSSS SSSTFL

Arabidopsis Description

ORP1DOSBP(Oxysterol binding protein)-related protein 1D [Source:UniProtKB/TrEMBL;Acc:F4HP28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.