Factsheet for VIT_06s0004g04930.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10248	Soybean	endoplasmic reticulum	88.82	88.82
KRH24783	Soybean	plastid	86.62	87.78
KRH29789	Soybean	endoplasmic reticulum	86.4	87.56
Bra002568.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	85.75	85.56
CDY33036	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	85.75	85.56
CDX80271	Canola	cytosol	85.31	84.93
AT5G59420.1	Thale cress	cytosol, plastid	84.21	84.03
GSMUA_Achr9P03900_001	Banana	cytosol	83.33	83.15
VIT_08s0007g00480.t01	Wine grape	cytosol	78.29	80.04
GSMUA_Achr1P17320_001	Banana	cytosol	80.04	79.18
Zm00001d028606_P002	Maize	cytosol	76.97	76.14
Os03t0274000-01	Rice	plasma membrane	76.32	75.16
Zm00001d047812_P001	Maize	extracellular	76.54	74.89
KRG93817	Soybean	cytosol	14.69	74.44
TraesCS4A01G096600.1	Wheat	cytosol	75.0	73.87
TraesCS4D01G208700.1	Wheat	golgi	74.56	73.43
TraesCS4B01G207800.1	Wheat	cytosol	74.56	73.43
HORVU4Hr1G059840.1	Barley	cytosol	74.56	73.28
OQU92826	Sorghum	cytosol	76.97	71.2
Zm00001d037837_P002	Maize	endoplasmic reticulum, extracellular	39.47	58.44
Zm00001d006081_P001	Maize	cytosol	21.05	56.8
Zm00001d034225_P002	Maize	endoplasmic reticulum, extracellular	42.54	54.49
Zm00001d012754_P001	Maize	cytosol	36.4	52.7
Zm00001d052202_P001	Maize	cytosol	40.79	46.15
Zm00001d040358_P001	Maize	cytosol	42.54	38.04
VIT_02s0154g00250.t01	Wine grape	mitochondrion	27.41	25.25
VIT_18s0001g03790.t01	Wine grape	cytosol	30.04	17.77
VIT_02s0154g00240.t01	Wine grape	cytosol, nucleus	27.63	17.4
VIT_07s0031g02980.t01	Wine grape	plastid	28.29	16.82
VIT_01s0137g00290.t01	Wine grape	cytosol	28.51	16.33

Protein Annotations

Gene3D:1.20.120.1290	EntrezGene:100251963	wikigene:100251963	Gene3D:2.40.160.120	MapMan:5.8.1.1	ProteinID:CBI16114
ProteinID:CBI16114.3	UniProt:D7SKD8	EMBL:FN594951	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	EntrezGene:LOC100251963	wikigene:LOC100251963	InterPro:OSBP_sf	InterPro:Oxysterol-bd
InterPro:Oxysterol-bd_CS	PFAM:PF01237	ScanProsite:PS01013	PANTHER:PTHR10972	PANTHER:PTHR10972:SF136	SUPFAM:SSF144000
TIGR:TC64337	UniParc:UPI00019835D5	ArrayExpress:VIT_06s0004g04930	EnsemblPlantsGene:VIT_06s0004g04930	EnsemblPlants:VIT_06s0004g04930.t01	unigene:Vvi.992
RefSeq:XP_002283434	RefSeq:XP_002283434.1	:	:	:	:

Description

No Description!

Coordinates

chr6:+:5891010..5899924

Molecular Weight (calculated)

52020.1 Da

IEP (calculated)

4.971

GRAVY (calculated)

-0.658

Length

456 amino acids

Sequence
(BLAST)

001: MGSPKKNESK GFFAAMTSGL SMFGNAMHRS VNGLLGYEGV EVINPEGGKE DAEEEAQRGR WKEEERDSYW KMMQKYIGSD VTSMVTLPVL IFEPMTMLQK
101: MAELMEYSHL LDKADECEDP YMRLVYASSW AISVYYAYQR TWKPFNPILG ETYEMANHGG ITFISEQVSH HPPMSAGHAE NEHFTYEVTS KLKTKFLGNF
201: LDVYPVGRTR VTLKRDGVVL DLVPPPTKVN NLIFGRTWVD SPGEMIMSNM TTGDKAVLYF QPCGWFGAGR YEVDGYVYNA EEEPKILMTG KWNESMSYQP
301: CDIEGEPLTG TDLKEVWHVA DVPEGDKFQY THFAHKINSF DTAPRKLLAS DSRLRPDRYA LEKGDLSKAG AEKSSLEERQ RAEKRNREAK GHKFTPRWFD
401: FTEEVTPTPW GDLEVYQYNG KYTEHRAAVD SSGDIDKDDH ASIEFNPWQY GNLSAE

Best Arabidopsis Sequence Match ( AT5G59420.1 )
(BLAST)

001: MGSPKKNENK GFFAAMTSGF SMFGTAVSRS VNGVQGNEGV EVINPEGGKE DAEEEAQKGR WKDEERDSYW KMMQKYIGSD ITSMVTLPVV IFEPMTMLQK
101: MAEIMEYSHL LDQADECEDP YLRLVYASSW AISVYYAFQR TWKPFNPILG ETYEMVNHGG ISFISEQVSH HPPMSAGHAE NEHFIYDITS KLKTKLLGNS
201: VDVYPVGRTR VTLKKDGVVL DLVPPLTKIH NLIFGRTWVD SPGEMVMTNL TTGDKVVLYF QPCGWFGSGR YEVDGYVYSA AEEPKIMMTG KWNEKMSYQP
301: CDAEGEPLPG TELKEVWHLA DVPKNDNFQY THFAHKINSF DTAPAKLLAS DSRIRPDRYS LEQGDLSKAG SEKHSLEERQ RAEKRTRETK GQKFTPRWFD
401: LTDEITPTPW GDIEVYQYNG KYNEHRDTAE SSSSASNETD LKSIEFNPWQ YGNISTE

Arabidopsis Description

ORP3COxysterol-binding protein-related protein 3C [Source:UniProtKB/Swiss-Prot;Acc:Q93Y40]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.