CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 3
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	peroxisome
YLoc:	cytosol

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24783	Soybean	plastid	90.13	91.33
KRH29789	Soybean	endoplasmic reticulum	89.91	91.11
VIT_06s0004g04930.t01	Wine grape	cytosol	88.82	88.82
Bra002568.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	87.06	86.87
CDY33036	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	86.84	86.65
CDX80271	Canola	cytosol	86.84	86.46
AT5G59420.1	Thale cress	cytosol, plastid	83.11	82.93
GSMUA_Achr9P03900_001	Banana	cytosol	82.68	82.49
GSMUA_Achr1P17320_001	Banana	cytosol	82.46	81.56
KRH49107	Soybean	endoplasmic reticulum	82.68	81.25
KRG93817	Soybean	cytosol	16.01	81.11
KRG99957	Soybean	cytosol, plastid	82.02	80.95
Zm00001d028606_P002	Maize	cytosol	78.07	77.22
Zm00001d047812_P001	Maize	extracellular	77.41	75.75
Os03t0274000-01	Rice	plasma membrane	76.1	74.95
TraesCS4A01G096600.1	Wheat	cytosol	75.44	74.3
TraesCS4B01G207800.1	Wheat	cytosol	75.0	73.87
TraesCS4D01G208700.1	Wheat	golgi	75.0	73.87
HORVU4Hr1G059840.1	Barley	cytosol	74.78	73.49
OQU92826	Sorghum	cytosol	77.63	71.81
Zm00001d037837_P002	Maize	endoplasmic reticulum, extracellular	41.01	60.71
Zm00001d006081_P001	Maize	cytosol	21.05	56.8
Zm00001d034225_P002	Maize	endoplasmic reticulum, extracellular	43.42	55.62
Zm00001d012754_P001	Maize	cytosol	36.4	52.7
Zm00001d052202_P001	Maize	cytosol	42.32	47.89
Zm00001d040358_P001	Maize	cytosol	43.86	39.22
KRH64734	Soybean	plastid	29.82	17.37
KRH53184	Soybean	plastid	30.04	17.36
KRH16599	Soybean	plastid	29.39	17.09
KRH18807	Soybean	plastid	29.39	17.03
KRH77382	Soybean	cytosol	28.51	16.88
KRH28046	Soybean	cytosol	27.85	16.58
KRH04091	Soybean	cytosol	27.41	16.28
KRH57364	Soybean	cytosol	27.19	16.1
KRH63940	Soybean	nucleus, plastid	27.85	15.97
KRG97509	Soybean	plastid	28.29	15.67
KRH31371	Soybean	plastid	28.29	15.66
KRH53998	Soybean	plastid	27.19	15.54

Protein Annotations

EMBL:ACUP02009127	EnsemblPlants:KRH10248	EnsemblPlantsGene:GLYMA_15G037400	EntrezGene:100779808	Gene3D:1.20.120.1290	Gene3D:2.40.160.120
InterPro:OSBP_sf	InterPro:Oxysterol-bd	InterPro:Oxysterol-bd_CS	PANTHER:PTHR10972	PANTHER:PTHR10972:SF136	PFAM:PF01237
ProteinID:KRH10248	ProteinID:KRH10248.1	ScanProsite:PS01013	SUPFAM:SSF144000	UniParc:UPI000233AD40	UniProt:I1MDE5
MapMan:5.8.1.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:2950291..2955686

Molecular Weight (calculated)

52055.3 Da

IEP (calculated)

5.017

GRAVY (calculated)

-0.623

Length

456 amino acids

Sequence
(BLAST)

001: MGSPKKNENK GFFAAMTSGI SMFSSAMHRS VNGLLGYEGV EVINPDGGKE DAEEEAQRGR WKPEERDGYW KMMHKYIGSD VTSMVTLPVI IFEPMTMLQK
101: MAELMEYSYL LDQADECEDP YMRLVYASSW AISVYFAYQR TWKPFNPILG ETYEMANHGG ITFLAEQVSH HPPMSAGHAE NEHFTYDVTS KLKTKFLGNS
201: VDVYPVGRTR VTLKRDGVVI DLVPPPTKVN NLIFGRTWID SPGEMIMTNL TTGDKVVLYF QPCGWFGAGR YEVDGYVYNS AEEPKILMTG KWNESMSYQP
301: CDSEGEPLPG TELKEVWHVA DVPKNDKFQY TYFAHKINSF DTAPKKLLAS DSRLRPDRYA LEMGDLSKSG AEKSSLEDKQ RTEKKIREAK EHKFTPRWFD
401: LTEEVTSTPW GDLEIYQYNG KYTEHRAAID NSGSIDHVDN KEIEFNPWQY GNLSTE

Best Arabidopsis Sequence Match ( AT5G59420.1 )
(BLAST)

001: MGSPKKNENK GFFAAMTSGF SMFGTAVSRS VNGVQGNEGV EVINPEGGKE DAEEEAQKGR WKDEERDSYW KMMQKYIGSD ITSMVTLPVV IFEPMTMLQK
101: MAEIMEYSHL LDQADECEDP YLRLVYASSW AISVYYAFQR TWKPFNPILG ETYEMVNHGG ISFISEQVSH HPPMSAGHAE NEHFIYDITS KLKTKLLGNS
201: VDVYPVGRTR VTLKKDGVVL DLVPPLTKIH NLIFGRTWVD SPGEMVMTNL TTGDKVVLYF QPCGWFGSGR YEVDGYVYSA AEEPKIMMTG KWNEKMSYQP
301: CDAEGEPLPG TELKEVWHLA DVPKNDNFQY THFAHKINSF DTAPAKLLAS DSRIRPDRYS LEQGDLSKAG SEKHSLEERQ RAEKRTRETK GQKFTPRWFD
401: LTDEITPTPW GDIEVYQYNG KYNEHRDTAE SSSSASNETD LKSIEFNPWQ YGNISTE

Arabidopsis Description

ORP3COxysterol-binding protein-related protein 3C [Source:UniProtKB/Swiss-Prot;Acc:Q93Y40]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.