CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99957	Soybean	cytosol, plastid	95.47	95.89
KRH10248	Soybean	endoplasmic reticulum	81.25	82.68
KRH29789	Soybean	endoplasmic reticulum	79.31	81.78
KRH24783	Soybean	plastid	79.09	81.56
GSMUA_Achr1P17320_001	Banana	cytosol	79.31	79.83
GSMUA_Achr9P03900_001	Banana	cytosol	78.45	79.65
VIT_08s0007g00480.t01	Wine grape	cytosol	75.86	78.92
KRG93817	Soybean	cytosol	15.09	77.78
Os03t0274000-01	Rice	plasma membrane	76.08	76.24
Zm00001d028606_P002	Maize	cytosol	75.22	75.7
TraesCS4A01G096600.1	Wheat	cytosol	73.92	74.08
Solyc10g084800.1.1	Tomato	extracellular, plastid	73.06	74.02
TraesCS4D01G208700.1	Wheat	golgi	73.71	73.87
TraesCS4B01G207800.1	Wheat	cytosol	73.71	73.87
HORVU4Hr1G059840.1	Barley	cytosol	73.71	73.71
Zm00001d047812_P001	Maize	extracellular	73.71	73.39
OQU92826	Sorghum	cytosol	75.0	70.59
PGSC0003DMT400028593	Potato	cytosol, plastid	72.84	67.2
Zm00001d037837_P002	Maize	endoplasmic reticulum, extracellular	38.15	57.47
Zm00001d006081_P001	Maize	cytosol	20.47	56.21
Zm00001d034225_P002	Maize	endoplasmic reticulum, extracellular	40.73	53.09
Zm00001d012754_P001	Maize	cytosol	34.91	51.43
Zm00001d052202_P001	Maize	cytosol	39.87	45.91
Zm00001d040358_P001	Maize	cytosol	41.81	38.04
KRH64734	Soybean	plastid	29.74	17.62
KRH53184	Soybean	plastid	29.74	17.49
KRH18807	Soybean	plastid	29.53	17.41
KRH77382	Soybean	cytosol	28.66	17.27
KRH16599	Soybean	plastid	29.09	17.22
KRH04091	Soybean	cytosol	28.02	16.93
KRH28046	Soybean	cytosol	27.8	16.84
KRH57364	Soybean	cytosol	27.8	16.75
KRH53998	Soybean	plastid	27.8	16.17
KRH63940	Soybean	nucleus, plastid	27.59	16.1
KRG97509	Soybean	plastid	28.02	15.8
KRH31371	Soybean	plastid	28.02	15.78

Protein Annotations

EMBL:ACUP02004331	EnsemblPlants:KRH49107	EnsemblPlantsGene:GLYMA_07G132900	EntrezGene:100794335	Gene3D:1.20.120.1290	Gene3D:2.40.160.120
InterPro:OSBP_sf	InterPro:Oxysterol-bd	InterPro:Oxysterol-bd_CS	ncoils:Coil	PANTHER:PTHR10972	PANTHER:PTHR10972:SF136
PFAM:PF01237	ProteinID:KRH49107	ProteinID:KRH49107.1	ScanProsite:PS01013	SEG:seg	SUPFAM:SSF144000
UniParc:UPI0002338D7F	UniProt:I1KJZ4	MapMan:5.8.1.1	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:15735671..15740205

Molecular Weight (calculated)

52497.8 Da

IEP (calculated)

4.882

GRAVY (calculated)

-0.561

Length

464 amino acids

Sequence
(BLAST)

001: MAPKDPKQVA DAASSGGGGG FFASIASSLS NFGSAMSKSV NGLVGYEGLE VVNPDGGTED AEEEARKGRW KQEERDSYWK MMQKYVGSDI TSMVTLPVII
101: FEPMTMLQKM AELMEYSYLL DMADKTEDPY MRLVYASSFF ISVYYAYQRT WKPFNPILGE TYEMVNHGGI TFISEQVSHH PPMSAGHAET EHFTYDVTSK
201: LKTKFLGNSV DVYPVGRTRV TLKRDGVVLD LVPPPTKVSN LIFGRTWIDS PGEMILTNLT TGDKVVLYFQ PCGWFGAGRY EVDGYVYNSA DEPKILMTGK
301: WNEAMNYQVC DSEGEPLPGT ELKEIWRVAD TPKKDKFQYT HFAHKINSFD TAPKKLLASD SRLRPDRMAL EKGDLSTSGY EKSSLEERQR AEKRNREAKG
401: HKFTPRWFDL TDEVTPTPWG DLEVYQYNGK YTQHCAAVDS SECIEVPDIR PEFNPWQYDN LDAE

Best Arabidopsis Sequence Match ( AT5G02100.1 )
(BLAST)

001: MASNDPKNGG GFFASLASSI TNFGSAMSKS VNGLMGYEGL EVINPEGSTD DAEEEAGRGR WKQEERDGYW KMMQKYIGSD VTSMVTLPVI IFEPMTMLQK
101: MAELMEYSYL LDMADKTEDP YMRMVYASSW AISVYYAYQR TWKPFNPILG ETYEMTNHNG INFIAEQVCH HPPMSAGHAE NEHFAYDCTS KLKTKFLGNS
201: IDVYPVGRTR VTLKRDGVVL DLVPPLTKVH NLIFGRTWVD SPGEMVMTNL TTGDKVVLYF QPCGWFGSGR YEVDGYVYNS AEEPKMLMTG KWNESLSYQP
301: CDAEGEPLPG TELKEVWKVA EAPKNDKYQY THFAHKINSF DTAPKKLLSS DSRLRPDRYA LEMGDMSKSG FEKSSLEDRQ RAEKKSREEK GQKFAPKWFD
401: ETEEVTPTPW GDLEVYQFNG KYSVHRATAE NSEDTTDVKL TQFNPWQFQD LSA

Arabidopsis Description

ORP3AOxysterol-binding protein-related protein 3A [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM1]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.