Factsheet for Solyc10g084800.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 29876421

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028593	Potato	cytosol, plastid	98.25	89.46
GSMUA_Achr1P17320_001	Banana	cytosol	75.98	75.49
VIT_08s0007g00480.t01	Wine grape	cytosol	73.14	75.11
GSMUA_Achr9P03900_001	Banana	cytosol	74.67	74.84
KRH49107	Soybean	endoplasmic reticulum	74.02	73.06
Os03t0274000-01	Rice	plasma membrane	73.8	73.0
KRG99957	Soybean	cytosol, plastid	73.36	72.73
TraesCS4D01G208700.1	Wheat	golgi	73.14	72.35
TraesCS4B01G207800.1	Wheat	cytosol	73.14	72.35
HORVU4Hr1G059840.1	Barley	cytosol	73.14	72.2
TraesCS4A01G096600.1	Wheat	cytosol	72.93	72.14
Zm00001d028606_P002	Maize	cytosol	72.49	72.02
Zm00001d047812_P001	Maize	extracellular	72.05	70.82
OQU92826	Sorghum	cytosol	72.49	67.34
Zm00001d037837_P002	Maize	endoplasmic reticulum, extracellular	37.77	56.17
Zm00001d006081_P001	Maize	cytosol	20.31	55.03
Zm00001d034225_P002	Maize	endoplasmic reticulum, extracellular	41.92	53.93
Zm00001d012754_P001	Maize	cytosol	34.28	49.84
Zm00001d052202_P001	Maize	cytosol	40.83	46.4
Zm00001d040358_P001	Maize	cytosol	42.79	38.43
Solyc08g078960.2.1	Tomato	cytosol	27.29	24.18
Solyc12g010510.1.1	Tomato	cytosol, mitochondrion, plastid	28.38	19.82
Solyc11g013190.1.1	Tomato	nucleus, plastid	30.79	17.39
Solyc07g006100.2.1	Tomato	nucleus	28.38	16.65
Solyc05g013960.2.1	Tomato	cytosol	28.17	16.1

Protein Annotations

EnsemblPlants:Solyc10g084800.1.1	EnsemblPlantsGene:Solyc10g084800.1	Gene3D:1.20.120.1290	Gene3D:2.40.160.120	InterPro:OSBP_sf	InterPro:Oxysterol-bd
InterPro:Oxysterol-bd_CS	PANTHER:PTHR10972	PANTHER:PTHR10972:SF136	PFAM:PF01237	ScanProsite:PS01013	SEG:seg
SUPFAM:SSF144000	UniParc:UPI000276A590	UniProt:K4D3R4	MapMan:5.8.1.1	:	:

Description

No Description!

Coordinates

chr10:+:64208132..64214928

Molecular Weight (calculated)

51791.8 Da

IEP (calculated)

5.090

GRAVY (calculated)

-0.562

Length

458 amino acids

Sequence
(BLAST)

001: MASNKDGNQS GSGGGGFFSF LGSSLTNIAK SVNGMLGHEG LEVVNPDGGN EDAGAEAQRG RWKQEDRDNY WKMMQKYIGA DITSLVTLPV IICEPMTNLQ
101: KMAELMEYSY LLELADECED PHMRLVYAAT WFISVYYALQ RTWKPFNPIL GETYEFVNHA GITFIAEQVC HHPPIGAAHA ENEHFKYDIT SKVKSKFLGN
201: SVEVYPLGRS RLTLKKSGVV LDLVPPPTKV HNLIFGRTWI DSPGEMILTN LTTGDKVLLY FQPCGWFGAG RYEVDGYVYN SEEEPKILMT GKWNESISYQ
301: PCDLEGEPMA GSTLKEVWKA AEAPKNDKFQ YTYFAHKINS FDTAPKKLLA SDSRLRPDRY ALEIGDVSKA SSEKSRLEER QRADRRTREA KGDEFKPKWF
401: NLSNEICPTP WGELEVYEYN GKYHEHRAAI DSSDHVEEAD AKTTEFNPWQ YEDSVVSA

Best Arabidopsis Sequence Match ( AT5G02100.1 )
(BLAST)

001: MASNDPKNGG GFFASLASSI TNFGSAMSKS VNGLMGYEGL EVINPEGSTD DAEEEAGRGR WKQEERDGYW KMMQKYIGSD VTSMVTLPVI IFEPMTMLQK
101: MAELMEYSYL LDMADKTEDP YMRMVYASSW AISVYYAYQR TWKPFNPILG ETYEMTNHNG INFIAEQVCH HPPMSAGHAE NEHFAYDCTS KLKTKFLGNS
201: IDVYPVGRTR VTLKRDGVVL DLVPPLTKVH NLIFGRTWVD SPGEMVMTNL TTGDKVVLYF QPCGWFGSGR YEVDGYVYNS AEEPKMLMTG KWNESLSYQP
301: CDAEGEPLPG TELKEVWKVA EAPKNDKYQY THFAHKINSF DTAPKKLLSS DSRLRPDRYA LEMGDMSKSG FEKSSLEDRQ RAEKKSREEK GQKFAPKWFD
401: ETEEVTPTPW GDLEVYQFNG KYSVHRATAE NSEDTTDVKL TQFNPWQFQD LSA

Arabidopsis Description

ORP3AOxysterol-binding protein-related protein 3A [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM1]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.