Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G208700.1 | Wheat | golgi | 99.78 | 99.78 |
| TraesCS4A01G096600.1 | Wheat | cytosol | 98.7 | 98.7 |
| HORVU4Hr1G059840.1 | Barley | cytosol | 98.49 | 98.28 |
| Zm00001d028606_P002 | Maize | cytosol | 86.18 | 86.55 |
| Os03t0274000-01 | Rice | plasma membrane | 86.39 | 86.39 |
| Zm00001d047812_P001 | Maize | extracellular | 84.45 | 83.91 |
| OQU92826 | Sorghum | cytosol | 86.18 | 80.93 |
| GSMUA_Achr9P03900_001 | Banana | cytosol | 78.4 | 79.43 |
| GSMUA_Achr1P17320_001 | Banana | cytosol | 77.75 | 78.09 |
| KRH10248 | Soybean | endoplasmic reticulum | 73.87 | 75.0 |
| VIT_08s0007g00480.t01 | Wine grape | cytosol | 71.92 | 74.66 |
| VIT_06s0004g04930.t01 | Wine grape | cytosol | 73.43 | 74.56 |
| KRH29789 | Soybean | endoplasmic reticulum | 72.14 | 74.22 |
| KRH24783 | Soybean | plastid | 71.71 | 73.78 |
| KRH49107 | Soybean | endoplasmic reticulum | 73.87 | 73.71 |
| KRG99957 | Soybean | cytosol, plastid | 73.43 | 73.59 |
| AT5G59420.1 | Thale cress | cytosol, plastid | 72.57 | 73.52 |
| Solyc10g084800.1.1 | Tomato | extracellular, plastid | 72.35 | 73.14 |
| CDX80271 | Canola | cytosol | 72.14 | 72.93 |
| Bra002568.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 71.71 | 72.65 |
| CDY33036 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 71.71 | 72.65 |
| KRG93817 | Soybean | cytosol | 13.82 | 71.11 |
| PGSC0003DMT400028593 | Potato | cytosol, plastid | 72.35 | 66.6 |
| Zm00001d037837_P002 | Maize | endoplasmic reticulum, extracellular | 41.68 | 62.66 |
| Zm00001d006081_P001 | Maize | cytosol | 22.25 | 60.95 |
| Zm00001d034225_P002 | Maize | endoplasmic reticulum, extracellular | 44.28 | 57.58 |
| Zm00001d012754_P001 | Maize | cytosol | 37.37 | 54.92 |
| Zm00001d052202_P001 | Maize | cytosol | 43.63 | 50.12 |
| Zm00001d040358_P001 | Maize | cytosol | 44.28 | 40.2 |
| TraesCS1B01G224800.1 | Wheat | cytosol | 28.73 | 17.92 |
| TraesCS7B01G202100.1 | Wheat | cytosol | 28.51 | 17.81 |
| TraesCS4B01G375900.1 | Wheat | cytosol | 27.21 | 17.5 |
| TraesCS5B01G116700.1 | Wheat | cytosol | 27.43 | 17.0 |
| TraesCS4B01G042300.2 | Wheat | plastid | 29.37 | 16.69 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G207800.1 | EnsemblPlantsGene:TraesCS4B01G207800 | Gene3D:1.20.120.1290 | Gene3D:2.40.160.120 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | InterPro:OSBP_sf | InterPro:Oxysterol-bd | PANTHER:PTHR10972 |
| PANTHER:PTHR10972:SF136 | PFAM:PF01237 | SEG:seg | SUPFAM:SSF144000 | MapMan:5.8.1.1 | : |
Description
No Description!
Coordinates
chr4B:-:444108107..444114054
Molecular Weight (calculated)
52045.3 Da
IEP (calculated)
5.151
GRAVY (calculated)
-0.544
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSKDQDLAA SSGGGGGFFS SIAAGVRSWG TAVHKSVNGL VGYEGLEVIN PDGGTDDAEA EAMKGRWKQE DRDSYWKMMN KYIGSDVTSL VTLPVIIFEP
101: MSMLQKMAEL MEYCDLLDKA DECEDPHMRM VYASTWALSA YLAYHRTWKP FNPILGETYE MVNHQGITFI AEQVSHHPPM GVAHCENDHF TYDITSKLKT
201: KFLGNSVEVY PVGRTRVTLK KSGVVLELVP PLTKVNNLIF GRTWVDSFGE MVLTNLTTGD KAVLYFQPCG WFGAGRFEVD GYVYTAAEEP KIMMTGKWNK
301: SMSYQPCDQE GDPLPGTELK EVWKAAPAPP NDKYQYTYFA HKINSFDTAP KKLLPSDSRL RPDRYALEKG DMSKSGAHKS RLEEQQRAEK KIRDTKGEQF
401: TPKWFKMTED ISPTPWGDLE VYEYNGRYAE HRAAIDSSSA VAEETDVSSI EFNPWQYGDS PSQ
101: MSMLQKMAEL MEYCDLLDKA DECEDPHMRM VYASTWALSA YLAYHRTWKP FNPILGETYE MVNHQGITFI AEQVSHHPPM GVAHCENDHF TYDITSKLKT
201: KFLGNSVEVY PVGRTRVTLK KSGVVLELVP PLTKVNNLIF GRTWVDSFGE MVLTNLTTGD KAVLYFQPCG WFGAGRFEVD GYVYTAAEEP KIMMTGKWNK
301: SMSYQPCDQE GDPLPGTELK EVWKAAPAPP NDKYQYTYFA HKINSFDTAP KKLLPSDSRL RPDRYALEKG DMSKSGAHKS RLEEQQRAEK KIRDTKGEQF
401: TPKWFKMTED ISPTPWGDLE VYEYNGRYAE HRAAIDSSSA VAEETDVSSI EFNPWQYGDS PSQ
001: MGSPKKNENK GFFAAMTSGF SMFGTAVSRS VNGVQGNEGV EVINPEGGKE DAEEEAQKGR WKDEERDSYW KMMQKYIGSD ITSMVTLPVV IFEPMTMLQK
101: MAEIMEYSHL LDQADECEDP YLRLVYASSW AISVYYAFQR TWKPFNPILG ETYEMVNHGG ISFISEQVSH HPPMSAGHAE NEHFIYDITS KLKTKLLGNS
201: VDVYPVGRTR VTLKKDGVVL DLVPPLTKIH NLIFGRTWVD SPGEMVMTNL TTGDKVVLYF QPCGWFGSGR YEVDGYVYSA AEEPKIMMTG KWNEKMSYQP
301: CDAEGEPLPG TELKEVWHLA DVPKNDNFQY THFAHKINSF DTAPAKLLAS DSRIRPDRYS LEQGDLSKAG SEKHSLEERQ RAEKRTRETK GQKFTPRWFD
401: LTDEITPTPW GDIEVYQYNG KYNEHRDTAE SSSSASNETD LKSIEFNPWQ YGNISTE
101: MAEIMEYSHL LDQADECEDP YLRLVYASSW AISVYYAFQR TWKPFNPILG ETYEMVNHGG ISFISEQVSH HPPMSAGHAE NEHFIYDITS KLKTKLLGNS
201: VDVYPVGRTR VTLKKDGVVL DLVPPLTKIH NLIFGRTWVD SPGEMVMTNL TTGDKVVLYF QPCGWFGSGR YEVDGYVYSA AEEPKIMMTG KWNEKMSYQP
301: CDAEGEPLPG TELKEVWHLA DVPKNDNFQY THFAHKINSF DTAPAKLLAS DSRIRPDRYS LEQGDLSKAG SEKHSLEERQ RAEKRTRETK GQKFTPRWFD
401: LTDEITPTPW GDIEVYQYNG KYNEHRDTAE SSSSASNETD LKSIEFNPWQ YGNISTE
Arabidopsis Description
ORP3COxysterol-binding protein-related protein 3C [Source:UniProtKB/Swiss-Prot;Acc:Q93Y40]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.