CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24783	Soybean	plastid	98.0	98.0
KRH10248	Soybean	endoplasmic reticulum	91.11	89.91
VIT_06s0004g04930.t01	Wine grape	cytosol	87.56	86.4
KRG93817	Soybean	cytosol	16.89	84.44
CDX80271	Canola	cytosol	84.89	83.41
Bra002568.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	84.67	83.37
CDY33036	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	84.44	83.15
AT5G59420.1	Thale cress	cytosol, plastid	82.44	81.18
GSMUA_Achr9P03900_001	Banana	cytosol	80.89	79.65
KRH49107	Soybean	endoplasmic reticulum	81.78	79.31
KRG99957	Soybean	cytosol, plastid	81.11	79.0
GSMUA_Achr1P17320_001	Banana	cytosol	80.0	78.09
Zm00001d028606_P002	Maize	cytosol	77.56	75.7
Zm00001d047812_P001	Maize	extracellular	76.67	74.03
Os03t0274000-01	Rice	plasma membrane	75.56	73.43
TraesCS4A01G096600.1	Wheat	cytosol	74.67	72.57
TraesCS4B01G207800.1	Wheat	cytosol	74.22	72.14
TraesCS4D01G208700.1	Wheat	golgi	74.22	72.14
HORVU4Hr1G059840.1	Barley	cytosol	73.78	71.55
OQU92826	Sorghum	cytosol	77.11	70.39
Zm00001d037837_P002	Maize	endoplasmic reticulum, extracellular	40.44	59.09
Zm00001d006081_P001	Maize	cytosol	21.56	57.4
Zm00001d034225_P002	Maize	endoplasmic reticulum, extracellular	43.33	54.78
Zm00001d012754_P001	Maize	cytosol	36.89	52.7
Zm00001d052202_P001	Maize	cytosol	42.0	46.9
Zm00001d040358_P001	Maize	cytosol	43.33	38.24
KRH64734	Soybean	plastid	30.0	17.24
KRH53184	Soybean	plastid	30.22	17.24
KRH16599	Soybean	plastid	29.56	16.96
KRH18807	Soybean	plastid	29.33	16.77
KRH77382	Soybean	cytosol	28.44	16.62
KRH28046	Soybean	cytosol	28.22	16.58
KRH04091	Soybean	cytosol	27.56	16.15
KRH57364	Soybean	cytosol	27.33	15.97
KRH63940	Soybean	nucleus, plastid	28.0	15.85
KRH53998	Soybean	plastid	27.78	15.66
KRG97509	Soybean	plastid	28.0	15.31
KRH31371	Soybean	plastid	28.0	15.29

Protein Annotations

EMBL:ACUP02006822	EMBL:BT097049	EnsemblPlants:KRH29789	EnsemblPlantsGene:GLYMA_11G138800	EntrezGene:100808070	Gene3D:1.20.120.1290
Gene3D:2.40.160.120	InterPro:OSBP_sf	InterPro:Oxysterol-bd	InterPro:Oxysterol-bd_CS	PANTHER:PTHR10972	PANTHER:PTHR10972:SF136
PFAM:PF01237	ProteinID:KRH29789	ProteinID:KRH29789.1	ScanProsite:PS01013	SUPFAM:SSF144000	UniParc:UPI0001B16FEF
UniProt:C6THD1	MapMan:5.8.1.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:10560504..10565871

Molecular Weight (calculated)

51277.0 Da

IEP (calculated)

4.779

GRAVY (calculated)

-0.624

Length

450 amino acids

Sequence
(BLAST)

001: MGSPSKKNES KGFFAAVSSM FTSAVNRSVN GLSVEVINPE GGKEDSEEEA QRGRWKQEER DGYWKMMQKY IGSDVTSMVT LPVIIFEPMT MIQKIAELME
101: YSYLLDQADE SEDPYMQLVY ATSWAISVYF AYQRTWKPFN PILGETYEMV NHGGITFLAE QVSHHPPMSA AHAENEHFTY DVTSKLKTKF LGNSVDVYPV
201: GRTRVTLKRD GVVLDLVPPP TKVNNLIFGR TWIDSPGEMI MTNLTTGDKA VLYFQPCGWF GAGRYEVDGY IYNSSEEPKI LMTGKWNESM SYQPCDSEGE
301: PLPNTELKEV WHVADVPQND KFQYTHFAHK INSFDTAPKK LLASDSRLRP DRYALEMGDL SKSGAEKSSL EERQRAEKRS REEKGHSFTP RWFDLTEEVT
401: PTPWGDLEIY QYNGKYTEHR AAADNSGSID DVDVKSIEFN PWQYGNLVTE

Best Arabidopsis Sequence Match ( AT5G59420.1 )
(BLAST)

001: MGSPKKNENK GFFAAMTSGF SMFGTAVSRS VNGVQGNEGV EVINPEGGKE DAEEEAQKGR WKDEERDSYW KMMQKYIGSD ITSMVTLPVV IFEPMTMLQK
101: MAEIMEYSHL LDQADECEDP YLRLVYASSW AISVYYAFQR TWKPFNPILG ETYEMVNHGG ISFISEQVSH HPPMSAGHAE NEHFIYDITS KLKTKLLGNS
201: VDVYPVGRTR VTLKKDGVVL DLVPPLTKIH NLIFGRTWVD SPGEMVMTNL TTGDKVVLYF QPCGWFGSGR YEVDGYVYSA AEEPKIMMTG KWNEKMSYQP
301: CDAEGEPLPG TELKEVWHLA DVPKNDNFQY THFAHKINSF DTAPAKLLAS DSRIRPDRYS LEQGDLSKAG SEKHSLEERQ RAEKRTRETK GQKFTPRWFD
401: LTDEITPTPW GDIEVYQYNG KYNEHRDTAE SSSSASNETD LKSIEFNPWQ YGNISTE

Arabidopsis Description

ORP3COxysterol-binding protein-related protein 3C [Source:UniProtKB/Swiss-Prot;Acc:Q93Y40]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.