Factsheet for Zm00001d047812_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

mitochondrion 2
nucleus 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028606_P002	Maize	cytosol	93.56	94.58
Os03t0274000-01	Rice	plasma membrane	88.41	88.98
TraesCS4D01G208700.1	Wheat	golgi	83.91	84.45
TraesCS4B01G207800.1	Wheat	cytosol	83.91	84.45
TraesCS4A01G096600.1	Wheat	cytosol	83.91	84.45
HORVU4Hr1G059840.1	Barley	cytosol	83.26	83.62
GSMUA_Achr9P03900_001	Banana	cytosol	80.47	82.06
GSMUA_Achr1P17320_001	Banana	cytosol	78.54	79.39
KRH10248	Soybean	endoplasmic reticulum	75.75	77.41
KRH24783	Soybean	plastid	74.03	76.67
KRH29789	Soybean	endoplasmic reticulum	74.03	76.67
VIT_06s0004g04930.t01	Wine grape	cytosol	74.89	76.54
CDX80271	Canola	cytosol	74.68	75.98
Bra002568.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	74.46	75.93
CDY33036	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	74.25	75.71
VIT_08s0007g00480.t01	Wine grape	cytosol	72.32	75.56
AT5G59420.1	Thale cress	cytosol, plastid	72.75	74.18
KRG99957	Soybean	cytosol, plastid	73.18	73.81
KRH49107	Soybean	endoplasmic reticulum	73.39	73.71
Solyc10g084800.1.1	Tomato	extracellular, plastid	70.82	72.05
KRG93817	Soybean	cytosol	13.52	70.0
Zm00001d037837_P002	Maize	endoplasmic reticulum, extracellular	44.21	66.88
Zm00001d006081_P001	Maize	cytosol	23.82	65.68
PGSC0003DMT400028593	Potato	cytosol, plastid	70.6	65.41
Zm00001d034225_P002	Maize	endoplasmic reticulum, extracellular	47.64	62.36
Zm00001d012754_P001	Maize	cytosol	41.42	61.27
Zm00001d052202_P001	Maize	cytosol	46.57	53.85
Zm00001d040358_P001	Maize	cytosol	47.21	43.14
Zm00001d029872_P002	Maize	cytosol, extracellular, nucleus	28.54	18.1
Zm00001d030609_P002	Maize	cytosol	27.47	17.23
Zm00001d048544_P003	Maize	cytosol	27.25	17.0
Zm00001d047105_P007	Maize	cytosol, extracellular, nucleus	26.18	16.14
Zm00001d033669_P003	Maize	plastid	28.33	16.1
Zm00001d013470_P007	Maize	plastid	27.9	15.91
Zm00001d049556_P002	Maize	cytosol	22.53	14.27

Protein Annotations

EMBL:BT038962	EnsemblPlants:Zm00001d047812_P001	EnsemblPlants:Zm00001d047812_T001	EnsemblPlantsGene:Zm00001d047812	EntrezGene:100272570	Gene3D:1.20.120.1290
Gene3D:2.40.160.120	InterPro:OSBP_sf	InterPro:Oxysterol-bd	InterPro:Oxysterol-bd_CS	PANTHER:PTHR10972	PANTHER:PTHR10972:SF136
PFAM:PF01237	ProteinID:AQL07690.1	ScanProsite:PS01013	SEG:seg	SUPFAM:SSF144000	UniParc:UPI00017B7E45
UniProt:B4FPC4	MapMan:5.8.1.1	:	:	:	:

Description

Oxysterol-binding protein-related protein 3B

Coordinates

chr9:-:142388915..142393403

Molecular Weight (calculated)

52231.2 Da

IEP (calculated)

4.820

GRAVY (calculated)

-0.562

Length

466 amino acids

Sequence
(BLAST)

001: MGSKDQGGGA ASSGGGFFSS FAAGMRSWGT AVHKSVNGLL GYEGLEVINP DGGTDDAEEE ALRGRWKQED RDSYWKMMHK YIGSDVTSLV TLPVIIFEPM
101: TMLQKMAELM EYCELLDKAD ECEDPYMRMV YASTWAVSVY FAYQRTWKPF NPILGETYEM VNHQGITFLA EQVSHHPPMG AAHCENEHFT YDITSKVKTK
201: FLGNSLEIYP VGRTRVTLKK SGVVLDLVPP LTKVNNLIFG RTWVDSPGEM VMTNLTTGDK AVLYFQPCGW FGAGRYEVDG YVYSAAEEPK IMITGKWNKS
301: LSCQPCDQEG DPLPGTELKE IWRVAPAPQN DGYQYTHFAH KINSFSTAPK KLLASDSRLR PDRYALEKGD MSKSGSEKSR LEEQQRAEKR TREAKGEQFT
401: PRWFNVTDAV ASTPWGDLEI CEYSGRYTEH RAAIDSSNST DDDDEIDVTS VEFDPWQYGG SSSSPQ

Best Arabidopsis Sequence Match ( AT5G59420.1 )
(BLAST)

001: MGSPKKNENK GFFAAMTSGF SMFGTAVSRS VNGVQGNEGV EVINPEGGKE DAEEEAQKGR WKDEERDSYW KMMQKYIGSD ITSMVTLPVV IFEPMTMLQK
101: MAEIMEYSHL LDQADECEDP YLRLVYASSW AISVYYAFQR TWKPFNPILG ETYEMVNHGG ISFISEQVSH HPPMSAGHAE NEHFIYDITS KLKTKLLGNS
201: VDVYPVGRTR VTLKKDGVVL DLVPPLTKIH NLIFGRTWVD SPGEMVMTNL TTGDKVVLYF QPCGWFGSGR YEVDGYVYSA AEEPKIMMTG KWNEKMSYQP
301: CDAEGEPLPG TELKEVWHLA DVPKNDNFQY THFAHKINSF DTAPAKLLAS DSRIRPDRYS LEQGDLSKAG SEKHSLEERQ RAEKRTRETK GQKFTPRWFD
401: LTDEITPTPW GDIEVYQYNG KYNEHRDTAE SSSSASNETD LKSIEFNPWQ YGNISTE

Arabidopsis Description

ORP3COxysterol-binding protein-related protein 3C [Source:UniProtKB/Swiss-Prot;Acc:Q93Y40]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.