Factsheet for TraesCS4B01G375900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G537000.1	Wheat	cytosol, nucleus, plasma membrane	97.08	95.62
HORVU4Hr1G088060.4	Barley	mitochondrion	81.81	91.74
TraesCS4D01G361400.2	Wheat	cytosol, nucleus, plasma membrane	91.81	89.69
KXG40415	Sorghum	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	72.92	72.02
TraesCS1B01G224800.1	Wheat	cytosol	71.94	69.81
Zm00001d048544_P003	Maize	cytosol	71.53	68.94
GSMUA_Achr5P20840_001	Banana	cytosol	47.36	66.47
Solyc08g078960.2.1	Tomato	cytosol	46.39	64.6
GSMUA_Achr11P...	Banana	cytosol	59.44	62.57
GSMUA_Achr11P...	Banana	cytosol	61.39	61.99
VIT_02s0154g00250.t01	Wine grape	mitochondrion	42.08	61.21
PGSC0003DMT400012089	Potato	cytosol	59.03	58.46
TraesCS7B01G202100.1	Wheat	cytosol	58.89	57.22
VIT_02s0154g00240.t01	Wine grape	cytosol, nucleus	57.5	57.18
AT4G12460.7	Thale cress	cytosol	54.44	56.48
AT4G22540.5	Thale cress	cytosol	56.53	56.45
CDY21272	Canola	nucleus	53.89	55.91
Bra000774.1-P	Field mustard	nucleus	53.89	55.91
CDX79161	Canola	cytosol	56.25	55.71
Bra013624.1-P	Field mustard	cytosol	56.25	55.71
CDX76366	Canola	cytosol	55.69	55.62
CDX82950	Canola	cytosol	55.83	55.3
KRH04091	Soybean	cytosol	58.75	55.08
KRH57364	Soybean	cytosol	58.75	54.94
KRH77382	Soybean	cytosol	58.75	54.94
KRH28046	Soybean	cytosol	57.5	54.05
Bra020844.1-P	Field mustard	plastid	54.17	53.94
CDY42177	Canola	cytosol	55.42	52.36
TraesCS5B01G116700.1	Wheat	cytosol	49.17	47.39
CDX90832	Canola	nucleus	54.17	45.94
TraesCS4B01G042300.2	Wheat	plastid	51.11	45.15
TraesCS4B01G207800.1	Wheat	cytosol	17.5	27.21

Protein Annotations

EnsemblPlants:TraesCS4B01G375900.1	EnsemblPlantsGene:TraesCS4B01G375900	Gene3D:2.40.160.120	InterPro:IPR001849	InterPro:OSBP_sf	InterPro:Oxysterol-bd
InterPro:PH_domain	PANTHER:PTHR10972	PANTHER:PTHR10972:SF104	PFAM:PF01237	PFAM:PF15413	PFscan:PS50003
SEG:seg	SMART:SM00233	SUPFAM:SSF144000	SUPFAM:SSF50729	MapMan:35.1	:

Description

No Description!

Coordinates

chr4B:-:659584201..659590170

Molecular Weight (calculated)

81327.6 Da

IEP (calculated)

7.103

GRAVY (calculated)

-0.672

Length

720 amino acids

Sequence
(BLAST)

001: MRARDLHPLC CLPVDCPSPP PAPAPAAVAG LLHKWTNIGK GWRPRWFAIL RGGLLAYSKI RPRAAGSPTP LPAPEDAAAP RLIGPAGYAA AAPEDRPIGL
101: VHLKISSSFR ESKSDDKRFY IITPTKTLQL RTNSVKDRVA WIEALVSARS ESSPNGVLLY DQNDASFSTD RLRNRMHAEG LGEEVIKDCE QIVHSEFSQY
201: YTQMKQRCEE YLSFFGSLPQ QLEVLNEQDT THSIRPECSC SGHGKCCESS NTESSDDAGI QELDESSDED DYNFCDTRQS FSDSAASPDL RIKHSNSSND
301: VQQYDHNFVE SRSGKRENEC LLLPLKRRTK LPEPVEKEKG VSLWSMIKDN VGKDLTRVCL PVYFNEPISS LQKCFEDLEY SHLLDRAYDY GLKGNSVMRT
401: LCVAAFAVSG YASSDGRPCK PFNPLLGETY EADFPENGIR FFSEKVSHHP MVMACHCEGR GWKFWGESNV KSKFWGQTIQ LDPVGVLTLE FDDGEIFKWS
501: KVTTTINNLI IGRLYCHHHG TMKISGNRQH SCKLTFKQQS FLERNPRQVQ GVVEDIGGAK VATLRGKWDE SLYCNVTNDG VNSSAESTLL WKKHEPPTNS
601: TRYNLSSFAI TLNELTPNLK EKLPPTDSRL RPDQRHLENG EYDKANSEKL RLETRQRMAR KMQDNGWKPR WFDRDTEDGP FRYTGGYWEA REQRKWDGCR
701: DIFGELPGKK TSPVPASVGI

Best Arabidopsis Sequence Match ( AT4G12460.1 )
(BLAST)

001: MPLTRSKSLP ATENGGSDRE TLQSGRSVAG ILYKWTNYGK GWRSRWFLLR DGILSYSKIR RPENVNLLSP SDDLRLIGDI STDRLLRMKS CSGRSRRKHH
101: KNIGIVHLKV SSYRESKSDH RKFYIFTATK TLHLRTDSRS DRAAWLQALA STRGIVPLQS INGDFSFVSP KDLSISTERL KKRLFEEGMN ESLVKECEQI
201: VDSEFCEVQE QIKLLHEERK KLLDALRQLE MANLEAEASG IHDDVYQLRN HKYSSLGRGK YSECSTSASS DDKQEFEDIS EEDEASFHDT KESFGEPDVG
301: SVLTHFKRRT KLPDPAEKER GVSLWSMIKD NVGKDLTRVC LPVYFNEPIS SLQKCFEDLE YSYLLDQAYE YGKSGKSLLR ALNVAAFAVS GYASTEGRHC
401: KPFNPLLGET YEADFPEKGI RFFSEKVSHH PTVIACHCEG KGWKFWGDTN LRSKFWGRSI QLEPVGILTL EFDDGEIFQW SKVTTTIYNI LLGKLYCDHH
501: GIMKIRGNRQ YSCMLKFKEQ SILDRNPHQV NGFVEDVTGK KAATVFGKWN DSLYYVAGDG INKASASLLW KATKAPPNVT RYNFTSFAMT LNELIPGLEE
601: KLPPTDSRLR PDQRHLENGE YEKANEEKQR LERRQRMSRQ IQESGWRPRW FEPQGESESY KYTGGYWEAR DVKSWDDCPN IFGEFTEEVA DCA

Arabidopsis Description

ORP2BOSBP(oxysterol binding protein)-related protein 2B [Source:TAIR;Acc:AT4G12460]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.