Factsheet for VIT_07s0031g02980.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G024620.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	8.08	80.52
HORVU2Hr1G031380.1	Barley	cytosol	33.9	76.47
HORVU3Hr1G049220.1	Barley	cytosol	17.08	73.6
VIT_18s0001g03790.t01	Wine grape	cytosol	72.1	71.72
TraesCS4A01G271700.1	Wheat	plastid	68.58	65.5
OQU91126	Sorghum	plastid	68.32	65.34
GSMUA_Achr10P...	Banana	plastid	67.93	64.08
TraesCS4B01G042300.2	Wheat	plastid	68.06	64.05
TraesCS4D01G039500.1	Wheat	plastid	68.19	63.94
Zm00001d033669_P003	Maize	plastid	68.06	63.66
GSMUA_Achr2P07260_001	Banana	plastid	57.89	62.98
Zm00001d013470_P007	Maize	plastid	65.84	61.81
KRH63940	Soybean	nucleus, plastid	63.89	61.64
KRH53998	Soybean	plastid	63.49	61.03
PGSC0003DMT400029169	Potato	nucleus	60.63	60.08
Solyc07g006100.2.1	Tomato	nucleus	60.76	59.67
Solyc12g010510.1.1	Tomato	cytosol, mitochondrion, plastid	50.72	59.3
PGSC0003DMT400020224	Potato	cytosol	50.33	59.11
VIT_02s0154g00250.t01	Wine grape	mitochondrion	38.07	58.99
VIT_01s0137g00290.t01	Wine grape	cytosol	57.89	55.78
VIT_02s0154g00240.t01	Wine grape	cytosol, nucleus	48.5	51.38
GSMUA_Achr3P21140_001	Banana	nucleus	70.14	38.05
VIT_08s0007g00480.t01	Wine grape	cytosol	16.69	28.7
VIT_06s0004g04930.t01	Wine grape	cytosol	16.82	28.29

Protein Annotations

EntrezGene:100249278	wikigene:100249278	Gene3D:2.40.160.120	MapMan:35.1	ProteinID:CBI21644	ProteinID:CBI21644.3
ncoils:Coil	UniProt:D7SWJ5	EMBL:FN595233	InterPro:IPR001849	EntrezGene:LOC100249278	wikigene:LOC100249278
InterPro:OSBP_sf	InterPro:Oxysterol-bd	PFAM:PF01237	PFAM:PF15413	InterPro:PH_domain	PFscan:PS50003
PANTHER:PTHR10972	PANTHER:PTHR10972:SF100	SMART:SM00233	SUPFAM:SSF144000	SUPFAM:SSF50729	UniParc:UPI00015C9F72
ArrayExpress:VIT_07s0031g02980	EnsemblPlantsGene:VIT_07s0031g02980	EnsemblPlants:VIT_07s0031g02980.t01	RefSeq:XP_002272577	RefSeq:XP_002272577.1	SEG:seg

Description

No Description!

Coordinates

chr7:+:19705101..19718709

Molecular Weight (calculated)

88285.7 Da

IEP (calculated)

7.590

GRAVY (calculated)

-0.834

Length

767 amino acids

Sequence
(BLAST)

001: MPPSAAGSFR SHSTKHRHNF RLSSPRSESP SPNHRRHIRR SASSLQPQMS VMINDIVGKG ISGILYKWVN YGRGWRRRWF VLQDGVMSYY KLHGRDKITV
101: NQDTERGSKV IGEASFRRVC SREIRHSQPR CKPFGEIHLK VSSIRESRTD DRRFSIFTGT KRLHLRAETR EDRMLWMEAL RAMKELFPRV SNNELMAPSE
201: NVVVSTEKLR QRLSEEGISE SAIQDSEQIM KSEFTKMHSQ LMVLKQRQVI LVDALRHLEA EKVDLENTLV DESQRQSKAQ EASSTARQHQ DDEGSASDSD
301: VDNDGHDAAE EDTDDDDDDE FFDTQDFLSS SSLKCRGSDF RRLSFDTDDQ EPLNSMDDID SSTRSNGTNY PHVRRRNKLP DAVEKEKGVS LWSIIKDNIG
401: KDLTKVCLPV YFNEPISSLQ KCFEDLEYSY LLDQAYECGK MGNSLLRILN VAAFAVSGYA CTDGRNCKPF NPLLGETYEA DYPDMGLRFI SEKVSHHPMI
501: VACHCEGHGW KLWGDSNLKS KFWGRSIQLD PVGLLTLEFD DGEVFQYRKV TTSIYNLILG KLYCEHYGTM HIRGNRDYSC KIKFKEQSIV DRNPHQVQGI
601: VQDRKGKTVA TLFGKWDESM HYMNGDCSGK GKGSDPSSEA QLLWKRSKPS KFQTKYNFSS FSMTLNELTP GLEEKLPPTD SRLRPDQRCL ENGQYEMANS
701: EKLRLEQRQR QASKMQERGW KPRWFAKEKG ENAYRYVGGY WETREAGKWE SCPDIFGQVH KDHTLDS

Best Arabidopsis Sequence Match ( AT4G08180.2 )
(BLAST)

001: MHPFCCVTTV SDHSPSMPPL PEPQPPLPNY AADFGSARSE PIITRSASQS YNHSGQFNNN LIHSLSFNHH QSDVTDRLGQ RVLALPAAVR EPPVDVKIND
101: IVGNGIAGIL YKWVNYGRGW RPRWFVLQDG VLSYYKIHGP DKIFVSPETE KGSKVIGDES ARMISRHNRR GGSSSSCQLR RKPFGEVHLK VSSVRESRSD
201: DKRFSIFTGT KRLHLRAETR EDRTTWVEAL QAVKDMFPRM SNSELMAPTN NLAMSTEKIR LRLIEEGVSE LAIQDCEQIM KSEFSALQSQ LVLLKQKQWL
301: LIDTLRQLET EKVDLENTVV DESQRQADNG CSGELRHEKF SGTATESDDD NERGDAAEEE FDEEENTFFD TRDFLSSSSF KSSGSGFRTS SFSSDEDGFE
401: SEDDIDPSIK SIGCNYPRVK RRKNLPDPVE KEKSVSLWSM IKDNIGKDLT KVCLPVYFNE PLSSLQKCFE DLEYSYLLDR AFEYGKRGNS LMRILNVAAF
501: AVSGYASTEG RICKPFNPLL GETYEADYPD KGLRFFSEKV SHHPMVVACH CDGTGWKFWG DSNLRSKFWG RSIQLDPVGV LTLQFDDGEI LQWSKVTTSI
601: YNLILGKLYC DHYGTMRIEG SAEYSCKLKF KEQSIIDRNP HQVHGIVQNK SGKTVATMFG KWDESIHFVT GDCSGKGKLS EDMSGAQLLW KRSKPPGNAT
701: KYNLTRFAIT LNELTPGLKE RLPPTDSRLR PDQRYLENGE FEMANTEKLR LEQRQRQARK MQERGWKPRW FMKEKGSESY RYKGGYWEAR EDGSWVDCPD
801: IFGHIDSDQQ MIE

Arabidopsis Description

ORP1COxysterol-binding protein-related protein 1C [Source:UniProtKB/Swiss-Prot;Acc:Q8L751]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.