CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034064.1-P	Field mustard	cytosol, plastid	94.89	38.04
CDX73970	Canola	cytosol	94.89	37.61
CDY07917	Canola	cytosol	93.75	37.16
CDY44693	Canola	cytosol, plastid	92.61	35.9
CDY41621	Canola	cytosol, plastid	92.05	35.76
AT3G09300.1	Thale cress	nucleus, plastid	90.91	34.93
CDY10468	Canola	cytosol	79.55	30.91
CDY40331	Canola	cytosol, plastid	78.41	30.46
CDY33036	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	73.86	28.45
CDX80271	Canola	cytosol	73.86	28.38
CDY51776	Canola	golgi	19.32	18.28
CDX75168	Canola	endoplasmic reticulum	29.55	10.42
CDY59861	Canola	endoplasmic reticulum	28.98	10.22
CDY34011	Canola	nucleus, plastid	31.25	7.02
CDY21272	Canola	nucleus	27.27	6.92
CDX83144	Canola	nucleus, plastid	30.68	6.89
CDX82950	Canola	cytosol	26.7	6.46
CDX79161	Canola	cytosol	26.7	6.46
CDX98007	Canola	cytosol	28.41	6.45
CDY19393	Canola	cytosol	28.41	6.43
CDX76366	Canola	cytosol	26.14	6.38
CDY42177	Canola	cytosol	26.7	6.17
CDX90832	Canola	nucleus	27.27	5.65
CDX75169	Canola	plastid	1.7	0.52
CDY14648	Canola	plastid	0.57	0.39
CDY64064	Canola	plastid	0.57	0.39

Protein Annotations

EnsemblPlants:CDY22188	EnsemblPlantsGene:GSBRNA2T00018601001	Gene3D:1.20.120.1290	InterPro:OSBP_sf	InterPro:Oxysterol-bd	PANTHER:PTHR10972
PANTHER:PTHR10972:SF136	PFAM:PF01237	ProteinID:CDY22188	ProteinID:CDY22188.1	SUPFAM:SSF144000	UniParc:UPI0004EF2B08
UniProt:A0A078GBW9	MapMan:35.1	:	:	:	:

Description

BnaC01g39130DBnaC01g39130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBW9]

Coordinates

chrLK032128:+:443083..444291

Molecular Weight (calculated)

20600.8 Da

IEP (calculated)

5.009

GRAVY (calculated)

-1.310

Length

176 amino acids

Sequence
(BLAST)

001: MLNQRKDGFN RTGKWNESMS YQQCDGEGEP LPGTELKEVW KLADAPKDDK YQYTHFAHKI NSFDTAPKKL LPSDSRLRPD RYALEMGDMS KSGYEKSSME
101: ERQRAEKRTR EEKGQSFTPK WFDITEEVTP TPWGDLEVYQ FNGKYLEHRE AADKSEDNTD PKSIPFNPWQ FPDMST

Best Arabidopsis Sequence Match ( AT3G09300.1 )
(BLAST)

001: MAPNDPKKAV GGGGSGFFAS LASSISNLGS AMTKSVNGLV PYEGLEVINP EGSTDDAEEE ASRGRWKQED RDGYWKMMQK YIGSDVTSMV TLPVIIFEPM
101: TMLQKMAELM EYSHLLDMAD KTEDPYLRMV YASSWAISVY YAFQRTWKPF NPILGETYEM ANYNGVNFIS EQVSHHPPMS AGHAENEHFT YDCTSKLKTK
201: FLGNSIDVYP VGRTRVTLKR DGVVLDLVPP LTKVHNLIFG RTWVDSPGEM IMTNQTTGDK VVLYFQPCGW FGSGRYEVDG YVYNASEEPK ILMTGKWNES
301: MSYQPCDGEG EPLPGTELKE VWKLADVPKD DKYQYTHFAH KINSFDTAPK KLLPSDSRLR PDRYALEMGD MSKSGYEKSS MEERQRAEKR TREEKGQAFT
401: PKWFDVTEEV TATPWGDLEV YQFNGKYSEH RAAADNSEDN TDPKSIQFNP WQFQDLST

Arabidopsis Description

ORP3BORP3B [Source:UniProtKB/TrEMBL;Acc:A0A178VKM3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.