CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83400
CDX95631
CDY27392
CDY37029
CDY56247
CDY57247

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02100.1	CDX83400	AT2G45140.1	19207211
AT5G02100.1	CDX95631	AT2G45140.1	19207211
AT5G02100.1	CDY27392	AT2G45140.1	19207211
AT5G02100.1	CDY37029	AT2G45140.1	19207211
AT5G02100.1	CDY56247	AT2G45140.1	19207211
AT5G02100.1	CDY57247	AT2G45140.1	19207211

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40331	Canola	cytosol, plastid	96.25	96.25
Bra009613.1-P	Field mustard	nucleus	92.05	94.77
AT5G02100.1	Thale cress	cytosol, plastid	87.42	87.42
CDY41621	Canola	cytosol, plastid	85.21	85.21
CDY44693	Canola	cytosol, plastid	85.21	85.02
CDY07917	Canola	cytosol	82.12	83.78
CDX73970	Canola	cytosol	81.9	83.56
CDY22188	Canola	nucleus	30.91	79.55
CDX80271	Canola	cytosol	75.5	74.67
CDY33036	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	75.28	74.62
CDX75168	Canola	endoplasmic reticulum	26.71	24.25
CDY59861	Canola	endoplasmic reticulum	26.27	23.85
CDY51776	Canola	golgi	8.17	19.89
CDY21272	Canola	nucleus	27.59	18.01
CDX76366	Canola	cytosol	27.81	17.48
CDX82950	Canola	cytosol	27.59	17.19
CDX79161	Canola	cytosol	27.59	17.19
CDY34011	Canola	nucleus, plastid	29.58	17.09
CDX83144	Canola	nucleus, plastid	29.36	16.96
CDY42177	Canola	cytosol	28.04	16.67
CDX98007	Canola	cytosol	27.37	16.0
CDY19393	Canola	cytosol	27.37	15.94
CDX90832	Canola	nucleus	27.59	14.72
CDX75169	Canola	plastid	12.36	9.79
CDY64064	Canola	plastid	0.88	1.55
CDY14648	Canola	plastid	0.88	1.55

Protein Annotations

EnsemblPlants:CDY10468	EnsemblPlantsGene:GSBRNA2T00032396001	Gene3D:1.20.120.1290	Gene3D:2.40.160.120	InterPro:OSBP_sf	InterPro:Oxysterol-bd
InterPro:Oxysterol-bd_CS	PANTHER:PTHR10972	PANTHER:PTHR10972:SF136	PFAM:PF01237	ProteinID:CDY10468	ProteinID:CDY10468.1
ScanProsite:PS01013	SUPFAM:SSF144000	UniParc:UPI0004EF2BC1	UniProt:A0A078FEC9	MapMan:5.8.1.1	:

Description

BnaCnng03690DBnaCnng03690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FEC9]

Coordinates

chrLK032003:-:660624..665016

Molecular Weight (calculated)

51658.4 Da

IEP (calculated)

4.873

GRAVY (calculated)

-0.674

Length

453 amino acids

Sequence
(BLAST)

001: MSPNDSKNRA GFLNSLASSI TNFGSVMTKS VNGLMGYEGI EVINPDGSTE DAEEEAGRGR WKQEERDGYW KMMQKYIGSD ITSMVTLPVI IFEPMTTLQK
101: MAELMEYSHL LDMADKTQDP YMRMVYASTW AISVYYAYQR TWKPFNPILG ETYEMTNHNG INFIAEQVSH HPPMSAAHAE NEHFSYDCTS KLKSKLLGNS
201: IDFYPVGRTR VTLKRDGVVL DLVPPPTKAH NLIFGRTWVD SSGEMIMTNL TTGDKAVLYF QPCGWFGSGR YEVDGYVYNS AEEPKILVTG KWNESLSYQA
301: CDTEGEPLTG TELKEVWKVA EAPEKDKYQY THFAHKINSF DTAPSKLLSS DSRLRPDRYA LDTGDMTKAG YEKSSLEERQ RAEKRTREEK GQRFVPKWFD
401: ETEDVTPTPW GDLEVYQFNG KYLVHRAAAD NSEINTDMES TQFNPWQFQD TSP

Best Arabidopsis Sequence Match ( AT5G02100.1 )
(BLAST)

001: MASNDPKNGG GFFASLASSI TNFGSAMSKS VNGLMGYEGL EVINPEGSTD DAEEEAGRGR WKQEERDGYW KMMQKYIGSD VTSMVTLPVI IFEPMTMLQK
101: MAELMEYSYL LDMADKTEDP YMRMVYASSW AISVYYAYQR TWKPFNPILG ETYEMTNHNG INFIAEQVCH HPPMSAGHAE NEHFAYDCTS KLKTKFLGNS
201: IDVYPVGRTR VTLKRDGVVL DLVPPLTKVH NLIFGRTWVD SPGEMVMTNL TTGDKVVLYF QPCGWFGSGR YEVDGYVYNS AEEPKMLMTG KWNESLSYQP
301: CDAEGEPLPG TELKEVWKVA EAPKNDKYQY THFAHKINSF DTAPKKLLSS DSRLRPDRYA LEMGDMSKSG FEKSSLEDRQ RAEKKSREEK GQKFAPKWFD
401: ETEEVTPTPW GDLEVYQFNG KYSVHRATAE NSEDTTDVKL TQFNPWQFQD LSA

Arabidopsis Description

ORP3AOxysterol-binding protein-related protein 3A [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM1]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.