CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
golgi 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY10468
CDY40331

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45140.1	CDY10468	AT5G02100.1	19207211
AT2G45140.1	CDY40331	AT5G02100.1	19207211

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040323.1-P	Field mustard	cytosol, golgi, plasma membrane	99.58	99.58
CDY27392	Canola	cytosol, golgi, plasma membrane	99.16	99.16
CDX83400	Canola	cytosol, nucleus, plasma membrane	94.56	93.78
CDY56247	Canola	cytosol	93.72	93.33
CDX95631	Canola	cytosol, golgi, plasma membrane	93.72	92.95
CDY57247	Canola	cytosol	93.31	92.92
AT2G45140.1	Thale cress	cytosol	89.96	89.96
CDX89063	Canola	cytosol, golgi, plasma membrane	82.43	82.43
CDX71796	Canola	cytosol	81.59	81.93
CDY48365	Canola	cytosol	81.59	81.59
CDY41153	Canola	cytosol	81.17	81.51
CDX67837	Canola	cytosol, golgi, plasma membrane	81.17	80.83
VIT_15s0048g00220.t01	Wine grape	cytosol, nucleus, plasma membrane	73.22	73.22
Solyc01g090910.2.1	Tomato	nucleus	70.29	72.1
KRH65384	Soybean	cytosol	71.97	71.37
KRH76164	Soybean	endoplasmic reticulum	71.97	71.37
Solyc10g018350.1.1	Tomato	cytosol	68.62	68.91
GSMUA_Achr5P20880_001	Banana	cytosol	61.92	61.92
Zm00001d049553_P001	Maize	plasma membrane	63.18	61.89
TraesCS7A01G300700.1	Wheat	cytosol	62.34	61.32
TraesCS7D01G296400.1	Wheat	cytosol	62.34	61.32
Os08t0156700-01	Rice	plasma membrane	61.92	60.91
GSMUA_Achr11P...	Banana	cytosol, nucleus, plasma membrane	60.25	60.25
EES14570	Sorghum	cytosol, nucleus, plasma membrane	61.09	59.84
CDX91914	Canola	cytosol	58.58	59.32
CDX74330	Canola	cytosol	58.16	58.9
PGSC0003DMT400066920	Potato	cytosol	65.69	58.8
Os04t0534400-01	Rice	cytosol	61.09	58.4
HORVU2Hr1G091830.4	Barley	cytosol	60.25	57.83
GSMUA_Achr1P20280_001	Banana	cytosol	51.46	57.48
TraesCS2A01G368500.1	Wheat	cytosol	59.83	57.43
TraesCS2B01G385700.2	Wheat	cytosol	59.41	57.03
TraesCS2D01G365300.2	Wheat	cytosol	59.0	56.63
PGSC0003DMT400055602	Potato	cytosol, golgi, plasma membrane	53.56	56.39
EES12559	Sorghum	cytosol	58.16	55.82
Solyc06g034220.2.1	Tomato	nucleus	52.72	55.51
HORVU6Hr1G060760.3	Barley	cytosol, golgi, plasma membrane	51.46	53.95
TraesCS6D01G220300.1	Wheat	cytosol	51.05	53.51
Zm00001d051288_P001	Maize	cytosol	50.21	53.33
Zm00001d017390_P001	Maize	cytosol	50.21	53.33
TraesCS6A01G237600.1	Wheat	cytosol, golgi, plasma membrane	50.63	53.07
KXG31128	Sorghum	cytosol	49.79	52.89
TraesCS6B01G266100.1	Wheat	cytosol, golgi, plasma membrane	50.21	52.63
GSMUA_Achr8P11120_001	Banana	cytosol	61.51	52.5
GSMUA_Achr11P...	Banana	cytosol	43.1	51.5
HORVU7Hr1G071270.2	Barley	mitochondrion	61.92	50.17
PGSC0003DMT400076826	Potato	cytosol	12.13	48.33
Os02t0643000-01	Rice	plasma membrane	50.63	46.72
Zm00001d025939_P003	Maize	cytosol, golgi, plasma membrane	56.9	45.64
CDX77746	Canola	cytosol	41.0	44.95
CDY28969	Canola	cytosol	41.0	44.95
CDY33519	Canola	cytosol	41.0	44.95
CDY40565	Canola	cytosol	41.0	44.95
CDY44556	Canola	cytosol, extracellular, plastid	18.83	44.12
CDY43438	Canola	cytosol	39.75	43.18
CDY25982	Canola	cytosol	39.33	42.73
Zm00001d036342_P001	Maize	cytosol	38.91	37.2
CDY06330	Canola	cytosol	42.26	29.45
CDX93534	Canola	cytosol	42.26	27.22
CDX95029	Canola	cytosol	41.42	26.47
CDY32136	Canola	cytosol	40.17	25.26
CDY31124	Canola	cytosol	40.17	25.2
CDY22664	Canola	plasma membrane	42.26	23.82

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	GO:A0A078HI57	UniProt:A0A078HI57	EnsemblPlants:CDY37029	ProteinID:CDY37029
ProteinID:CDY37029.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00063232001	InterPro:IPR000535
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202
PANTHER:PTHR10809	PANTHER:PTHR10809:SF94	InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI0004EED975
InterPro:VAP	SEG:seg	:	:	:	:

Description

BnaA04g26070DBnaA04g26070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HI57]

Coordinates

chrLK032390:+:72612..75254

Molecular Weight (calculated)

26509.9 Da

IEP (calculated)

8.595

GRAVY (calculated)

-0.407

Length

239 amino acids

Sequence
(BLAST)

001: MSNALLDIDP IDLQFPFELK KQISCSLYLA NKTDDYVAFK VKTTNPKKYC VRPNTGVVLP RSSSEVLVTM QAQKEAPADM QCKDKFLLQC VVASPGVTAK
101: DVTPEMFSKE AGHRVEETKL RVVYVDPPRP PSPVREGSEE GSSPRASVSD NGASDFTAAP RFSVDRLEPQ ENSSEARALI TRLTEEKNSA IQLNNRLQQE
201: LEKLKRESKR SQSGGGIPFM YVLLVGLIGL ILGYIMKRT

Best Arabidopsis Sequence Match ( AT2G45140.1 )
(BLAST)

001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT

Arabidopsis Description

PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.