Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43438 | Canola | cytosol | 99.55 | 99.55 |
| Bra017499.1-P | Field mustard | cytosol | 99.09 | 99.09 |
| CDX77746 | Canola | cytosol | 90.91 | 91.74 |
| CDY33519 | Canola | cytosol | 90.45 | 91.28 |
| CDY40565 | Canola | cytosol | 89.55 | 90.37 |
| CDY28969 | Canola | cytosol | 89.55 | 90.37 |
| AT5G47180.1 | Thale cress | cytosol | 90.0 | 90.0 |
| KRH28185 | Soybean | cytosol, golgi, nucleus | 62.27 | 62.56 |
| Solyc08g007200.2.1 | Tomato | unclear | 60.91 | 62.33 |
| PGSC0003DMT400052797 | Potato | cytosol | 60.45 | 61.86 |
| Solyc08g078000.2.1 | Tomato | nucleus | 60.45 | 60.45 |
| PGSC0003DMT400067515 | Potato | nucleus | 60.45 | 60.45 |
| KRH57501 | Soybean | plasma membrane | 57.73 | 60.19 |
| KRH04206 | Soybean | cytosol | 60.45 | 59.91 |
| KRH77304 | Soybean | plasma membrane, vacuole | 61.36 | 54.22 |
| GSMUA_Achr11P... | Banana | cytosol | 55.45 | 53.04 |
| GSMUA_Achr5P18320_001 | Banana | cytosol, nucleus, plasma membrane | 53.64 | 50.64 |
| TraesCS6A01G242200.1 | Wheat | cytosol, golgi, plasma membrane | 52.73 | 50.0 |
| TraesCS6B01G282300.1 | Wheat | cytosol, golgi, plasma membrane | 52.73 | 50.0 |
| TraesCS6D01G224100.1 | Wheat | cytosol, golgi, plasma membrane | 52.73 | 50.0 |
| Os10t0549100-01 | Rice | plasma membrane | 52.27 | 49.36 |
| Os02t0652550-00 | Rice | cytosol | 53.18 | 43.82 |
| CDX91914 | Canola | cytosol | 45.0 | 41.95 |
| CDX74330 | Canola | cytosol | 44.55 | 41.53 |
| HORVU6Hr1G062050.9 | Barley | mitochondrion | 53.64 | 40.55 |
| CDX95631 | Canola | cytosol, golgi, plasma membrane | 44.09 | 40.25 |
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 44.09 | 40.25 |
| CDY48365 | Canola | cytosol | 42.73 | 39.33 |
| CDX89063 | Canola | cytosol, golgi, plasma membrane | 42.73 | 39.33 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 42.73 | 39.33 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 42.73 | 39.33 |
| CDX71796 | Canola | cytosol | 42.27 | 39.08 |
| CDY57247 | Canola | cytosol | 42.27 | 38.75 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 42.27 | 38.75 |
| Zm00001d051329_P002 | Maize | mitochondrion, plasma membrane, plastid | 53.18 | 38.74 |
| CDY41153 | Canola | cytosol | 41.82 | 38.66 |
| CDY56247 | Canola | cytosol | 41.36 | 37.92 |
| Zm00001d017448_P001 | Maize | endoplasmic reticulum, golgi, plastid | 53.18 | 37.74 |
| Zm00001d014260_P001 | Maize | plastid | 30.45 | 37.64 |
| EES05798 | Sorghum | plastid | 53.64 | 36.42 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 14.55 | 31.37 |
| VIT_00s0287g00080.t01 | Wine grape | extracellular | 42.27 | 26.72 |
| TraesCS2B01G214400.1 | Wheat | mitochondrion | 30.45 | 25.0 |
| CDY06330 | Canola | cytosol | 36.82 | 23.62 |
| CDX93534 | Canola | cytosol | 36.36 | 21.56 |
| CDX95029 | Canola | cytosol | 36.36 | 21.39 |
| CDY31124 | Canola | cytosol | 35.91 | 20.73 |
| CDY32136 | Canola | cytosol | 35.45 | 20.53 |
| CDY22664 | Canola | plasma membrane | 36.82 | 19.1 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | GO:A0A078GLE3 | UniProt:A0A078GLE3 | EnsemblPlants:CDY25982 | ProteinID:CDY25982 |
| ProteinID:CDY25982.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00033511001 | InterPro:IPR000535 |
| InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:MSP_dom | PFAM:PF00635 | PIRSF:PIRSF019693 | PFscan:PS50202 |
| PANTHER:PTHR10809 | PANTHER:PTHR10809:SF42 | InterPro:PapD-like_sf | SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI0004EC98D2 |
| InterPro:VAP | SEG:seg | : | : | : | : |
Description
BnaC09g20050DBnaC09g20050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLE3]
Coordinates
chrLK032183:+:532200..534345
Molecular Weight (calculated)
24392.2 Da
IEP (calculated)
8.602
GRAVY (calculated)
-0.406
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGVGENQLI SIQPDELKFL FELEKQSYCD LKVSNKTDNY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDLQCKDKF LLQSTTVPPH
101: TDVDELPQDT FTKDSSKTLT ECKLKVSYIA TSTTQRSSES GATSGDGNGS ESISVTAIQR LKEERDAAVK QTQQLQHDLE MLKKRRSNSA NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT
101: TDVDELPQDT FTKDSSKTLT ECKLKVSYIA TSTTQRSSES GATSGDGNGS ESISVTAIQR LKEERDAAVK QTQQLQHDLE MLKKRRSNSA NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.