Factsheet for Solyc08g078000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067515	Potato	nucleus	97.27	97.27
Solyc08g007200.2.1	Tomato	unclear	75.45	77.21
KRH28185	Soybean	cytosol, golgi, nucleus	68.64	68.95
KRH04206	Soybean	cytosol	66.82	66.22
KRH57501	Soybean	plasma membrane	63.18	65.88
CDY28969	Canola	cytosol	63.18	63.76
CDY40565	Canola	cytosol	63.18	63.76
Bra022110.1-P	Field mustard	cytosol	62.73	63.3
AT5G47180.1	Thale cress	cytosol	63.18	63.18
CDX77746	Canola	cytosol	61.82	62.39
CDY33519	Canola	cytosol	61.82	62.39
Bra022111.1-P	Field mustard	cytosol	61.36	61.36
Bra024958.1-P	Field mustard	cytosol	60.45	61.01
Bra017499.1-P	Field mustard	cytosol	60.91	60.91
CDY43438	Canola	cytosol	60.91	60.91
CDY25982	Canola	cytosol	60.45	60.45
KRH77304	Soybean	plasma membrane, vacuole	67.27	59.44
GSMUA_Achr11P...	Banana	cytosol	56.82	54.35
GSMUA_Achr5P18320_001	Banana	cytosol, nucleus, plasma membrane	55.0	51.93
TraesCS6A01G242200.1	Wheat	cytosol, golgi, plasma membrane	54.09	51.29
TraesCS6B01G282300.1	Wheat	cytosol, golgi, plasma membrane	53.64	50.86
TraesCS6D01G224100.1	Wheat	cytosol, golgi, plasma membrane	53.64	50.86
Os10t0549100-01	Rice	plasma membrane	53.18	50.21
Os02t0652550-00	Rice	cytosol	55.0	45.32
HORVU6Hr1G062050.9	Barley	mitochondrion	54.55	41.24
Solyc08g078690.2.1	Tomato	cytosol	41.36	40.99
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	44.55	40.83
Solyc01g090910.2.1	Tomato	nucleus	43.18	40.77
Zm00001d051329_P002	Maize	mitochondrion, plasma membrane, plastid	55.45	40.4
Zm00001d017448_P001	Maize	endoplasmic reticulum, golgi, plastid	55.45	39.35
Solyc06g034220.2.1	Tomato	nucleus	40.0	38.77
Solyc10g018350.1.1	Tomato	cytosol	41.36	38.24
Zm00001d014260_P001	Maize	plastid	30.91	38.2
EES05798	Sorghum	plastid	55.0	37.35
Solyc08g007390.2.1	Tomato	unclear	27.73	30.35
VIT_00s0287g00080.t01	Wine grape	extracellular	44.09	27.87
TraesCS2B01G214400.1	Wheat	mitochondrion	32.73	26.87
Solyc01g098200.2.1	Tomato	cytosol	38.18	26.58
Solyc01g067720.2.1	Tomato	plastid	40.45	21.5

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535
InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:K4CNF9	InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693
PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF42	InterPro:PapD-like_sf	SUPFAM:SSF49354	EnsemblPlantsGene:Solyc08g078000.2
EnsemblPlants:Solyc08g078000.2.1	TMHMM:TMhelix	UniParc:UPI000276C8AD	InterPro:VAP	SEG:seg	:

Description

No Description!

Coordinates

chr8:-:61878988..61884700

Molecular Weight (calculated)

24950.5 Da

IEP (calculated)

7.943

GRAVY (calculated)

-0.530

Length

220 amino acids

Sequence
(BLAST)

001: MTGATNQFIS VSPEELKFQF ELEKQSYCDL KVTNSTESYV AFKVKTTSPK KYFVRPNTGV IHPWDSCFIR VTLQAQKEYP SDMQCKDKFL LQSTIVNSDA
101: EELPPDTFNK DSGRNVEECK LRVVYISPHS SPGHSEDAFK QSSDGNSSQA VQRARDERDA VFRQTQQLQQ ELEVLKRQKR RRSDAGFSLK FALLVGLIGL
201: MAGFLFKLLM SSPSTETVDV

Best Arabidopsis Sequence Match ( AT5G47180.2 )
(BLAST)

001: MTGVGENQLI SIQPDELKFL FELEKQSYCD LKVANKTENY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTIVPPH
101: TDVDELPQDT FTKDSGKTLT ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV RRRRNQRNSG NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT

Arabidopsis Description

PVA21Vesicle-associated protein 2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.