Factsheet for Bra024958.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33519	Canola	cytosol	98.17	98.17
CDX77746	Canola	cytosol	97.71	97.71
Bra022110.1-P	Field mustard	cytosol	94.95	94.95
Bra022111.1-P	Field mustard	cytosol	91.74	90.91
AT5G47180.1	Thale cress	cytosol	91.28	90.45
Bra017499.1-P	Field mustard	cytosol	89.45	88.64
KRH28185	Soybean	cytosol, golgi, nucleus	62.39	62.1
PGSC0003DMT400067515	Potato	nucleus	61.47	60.91
Solyc08g007200.2.1	Tomato	unclear	59.63	60.47
Solyc08g078000.2.1	Tomato	nucleus	61.01	60.45
KRH04206	Soybean	cytosol	61.47	60.36
KRH57501	Soybean	plasma membrane	58.26	60.19
PGSC0003DMT400052797	Potato	cytosol	59.17	60.0
GSMUA_Achr11P...	Banana	cytosol	56.42	53.48
KRH77304	Soybean	plasma membrane, vacuole	60.09	52.61
GSMUA_Achr5P18320_001	Banana	cytosol, nucleus, plasma membrane	54.59	51.07
TraesCS6A01G242200.1	Wheat	cytosol, golgi, plasma membrane	52.75	49.57
TraesCS6B01G282300.1	Wheat	cytosol, golgi, plasma membrane	52.75	49.57
TraesCS6D01G224100.1	Wheat	cytosol, golgi, plasma membrane	52.75	49.57
Os10t0549100-01	Rice	plasma membrane	52.75	49.36
Os02t0652550-00	Rice	cytosol	53.67	43.82
Bra003313.1-P	Field mustard	cytosol	43.58	42.6
Bra000978.1-P	Field mustard	cytosol	45.41	41.95
Bra040323.1-P	Field mustard	cytosol, golgi, plasma membrane	44.5	40.59
HORVU6Hr1G062050.9	Barley	mitochondrion	53.67	40.21
Bra014481.1-P	Field mustard	cytosol, golgi, plasma membrane	42.2	38.49
Bra007547.1-P	Field mustard	cytosol	41.74	38.24
Zm00001d051329_P002	Maize	mitochondrion, plasma membrane, plastid	52.29	37.75
Bra003423.1-P	Field mustard	cytosol, golgi, plasma membrane	41.28	37.5
Zm00001d017448_P001	Maize	endoplasmic reticulum, golgi, plastid	52.29	36.77
Zm00001d014260_P001	Maize	plastid	29.82	36.52
EES05798	Sorghum	plastid	52.75	35.49
Bra035442.1-P	Field mustard	cytosol	16.05	32.41
VIT_00s0287g00080.t01	Wine grape	extracellular	41.74	26.15
TraesCS2B01G214400.1	Wheat	mitochondrion	31.19	25.37
Bra031641.1-P	Field mustard	cytosol	36.24	23.03
Bra018597.1-P	Field mustard	cytosol	36.7	21.56
Bra030744.1-P	Field mustard	cytosol	37.16	20.61

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	EnsemblPlantsGene:Bra024958	EnsemblPlants:Bra024958.1	EnsemblPlants:Bra024958.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M4E852	InterPro:MSP_dom
PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF42	InterPro:PapD-like_sf
SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI000253FA9E	InterPro:VAP	SEG:seg	:

Description

AT5G47180 (E=3e-090) | vesicle-associated membrane family protein / VAMP family protein

Coordinates

chrA06:+:24396069..24398770

Molecular Weight (calculated)

24239.2 Da

IEP (calculated)

8.602

GRAVY (calculated)

-0.411

Length

218 amino acids

Sequence
(BLAST)

001: MSGVGENQLI SIVPDELKFL FELEKQSYCD LKVANKTEDY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDMQCRDKF LLQSTLVPPH
101: TDVDDLPQDT FTKDSGKTLT ECKLKVSYIS SSTTQRSSES GGTNGDGNGS ETISTIQRLK EERDAAVKPP QQLQHELEMV KKRRMNSGNG LSLKLAALVG
201: LIGLIIGFIL KLTLASPK

Best Arabidopsis Sequence Match ( AT5G47180.2 )
(BLAST)

001: MTGVGENQLI SIQPDELKFL FELEKQSYCD LKVANKTENY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTIVPPH
101: TDVDELPQDT FTKDSGKTLT ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV RRRRNQRNSG NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT

Arabidopsis Description

PVA21Vesicle-associated protein 2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.