Factsheet for Bra031641.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06330	Canola	cytosol	99.13	99.13
Bra018597.1-P	Field mustard	cytosol	77.84	71.97
Bra030744.1-P	Field mustard	cytosol	78.72	68.7
AT1G08820.3	Thale cress	cytosol	77.26	68.65
Bra003313.1-P	Field mustard	cytosol	28.28	43.5
VIT_14s0030g00730.t01	Wine grape	cytosol	42.57	43.45
Bra000978.1-P	Field mustard	cytosol	29.45	42.8
Bra040323.1-P	Field mustard	cytosol, golgi, plasma membrane	29.15	41.84
Bra003423.1-P	Field mustard	cytosol, golgi, plasma membrane	29.15	41.67
Bra007547.1-P	Field mustard	cytosol	28.86	41.6
Bra014481.1-P	Field mustard	cytosol, golgi, plasma membrane	28.86	41.42
Bra035442.1-P	Field mustard	cytosol	12.83	40.74
GSMUA_Achr8P21990_001	Banana	cytosol	35.28	40.2
PGSC0003DMT400057834	Potato	cytosol	36.44	39.56
Solyc01g098200.2.1	Tomato	cytosol	35.86	38.92
GSMUA_Achr10P...	Banana	cytosol	33.82	38.67
Bra022110.1-P	Field mustard	cytosol	23.91	37.61
GSMUA_Achr3P08840_001	Banana	cytosol	25.36	36.25
Bra024958.1-P	Field mustard	cytosol	23.03	36.24
Bra017499.1-P	Field mustard	cytosol	23.03	35.91
Bra022111.1-P	Field mustard	cytosol	22.74	35.45
TraesCS3A01G467600.2	Wheat	cytosol	34.11	32.23
TraesCS3D01G462100.3	Wheat	cytosol	34.11	32.23
TraesCS3B01G511900.2	Wheat	cytosol	33.82	31.96
Os01t0936800-01	Rice	cytosol, plasma membrane	35.28	31.84
KXG21863	Sorghum	cytosol	33.53	31.77
EES04183	Sorghum	cytosol	34.69	31.57
Zm00001d042180_P002	Maize	cytosol	36.44	31.17
Zm00001d010495_P002	Maize	cytosol	34.4	31.05
Zm00001d011904_P001	Maize	cytosol	35.28	30.95
HORVU3Hr1G099730.5	Barley	cytosol	33.82	30.85
KRG92793	Soybean	cytosol	41.98	29.94
KRH34006	Soybean	cytosol	42.86	27.74
Os05t0373000-01	Rice	cytosol	33.53	24.11

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	EnsemblPlantsGene:Bra031641	EnsemblPlants:Bra031641.1	EnsemblPlants:Bra031641.1-P	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M4ES63
InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF45
InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI00025432FD	InterPro:VAP	:

Description

AT1G08820 (E=2e-092) VAP27-2 | VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2); structural molecule

Coordinates

chrA09:+:35429989..35432278

Molecular Weight (calculated)

38305.4 Da

IEP (calculated)

6.385

GRAVY (calculated)

-0.418

Length

343 amino acids

Sequence
(BLAST)

001: MNMPLLDIQP RTLKFPVDLK KQTTCMVLLT NTTDRFVAFK VKTTSPKKYC VRPNVGVVAP NSSCEFSVIM QAFKEPPLDL ACKDKFLIQS TAVPADTTDE
101: DITASMFSKG EGKHIEENKL RVTLVMPSDS PELSPVKGPT KEEAVFEDSI LKDRSYGQSE ILPPPQYESE IVKEPRMVGH DELKASYGAK ELVQPKKGVT
201: GFMEDLNPAN DLKPTHNLDT PTAMDFPGDK GFTNGMTYPE VVQLEKRDGQ KINASDEPKL VKDIEEMKVK VKALESKLQQ ADSTISKLME ERSIGSQHRE
301: SLQQELADLR TKKIVKEKHI GFPLLFVCVV AFINIVIGYG LRT

Best Arabidopsis Sequence Match ( AT1G08820.2 )
(BLAST)

001: MNMPLLDIQP RTLQFAVDLK KQTSCVVQLT NTTHHYVAFK VKTTSPKKYC VRPNVGVVAP KSTCEFTVIM QAFKEPPPDM VCKDKFLIQS TAVSAETTDE
101: DITASMFSKA EGKHIEENKL RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD ELKAADNAKE LKTPKMATVD
201: FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE
301: LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE VHNGFPLLYV CVVAFIAYVI GHFLRT

Arabidopsis Description

PVA22VAP27-2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.