Factsheet for Bra003313.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009613.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45140.1	Bra009613.1-P	AT5G02100.1	19207211

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56247	Canola	cytosol	99.1	92.08
CDY57247	Canola	cytosol	98.65	91.67
Bra040323.1-P	Field mustard	cytosol, golgi, plasma membrane	93.27	87.03
AT2G45140.1	Thale cress	cytosol	88.34	82.43
Bra014481.1-P	Field mustard	cytosol, golgi, plasma membrane	82.06	76.57
Bra007547.1-P	Field mustard	cytosol	81.17	76.05
Bra003423.1-P	Field mustard	cytosol, golgi, plasma membrane	80.72	75.0
VIT_15s0048g00220.t01	Wine grape	cytosol, nucleus, plasma membrane	73.99	69.04
Solyc01g090910.2.1	Tomato	nucleus	70.4	67.38
KRH76164	Soybean	endoplasmic reticulum	72.65	67.22
KRH65384	Soybean	cytosol	72.65	67.22
Solyc10g018350.1.1	Tomato	cytosol	71.3	66.81
PGSC0003DMT400066920	Potato	cytosol	70.4	58.8
GSMUA_Achr5P20880_001	Banana	cytosol	60.99	56.9
Zm00001d049553_P001	Maize	plasma membrane	61.88	56.56
GSMUA_Achr1P20280_001	Banana	cytosol	54.26	56.54
Bra035442.1-P	Field mustard	cytosol	27.35	56.48
TraesCS7A01G300700.1	Wheat	cytosol	61.44	56.38
TraesCS7D01G296400.1	Wheat	cytosol	61.44	56.38
Bra000978.1-P	Field mustard	cytosol	59.64	56.36
GSMUA_Achr11P...	Banana	cytosol, nucleus, plasma membrane	60.09	56.07
Os04t0534400-01	Rice	cytosol	62.78	56.0
Os08t0156700-01	Rice	plasma membrane	60.54	55.56
PGSC0003DMT400055602	Potato	cytosol, golgi, plasma membrane	55.61	54.63
EES14570	Sorghum	cytosol, nucleus, plasma membrane	59.64	54.51
TraesCS2A01G368500.1	Wheat	cytosol	60.54	54.22
TraesCS2B01G385700.2	Wheat	cytosol	60.09	53.82
EES12559	Sorghum	cytosol	60.09	53.82
Solyc06g034220.2.1	Tomato	nucleus	54.71	53.74
TraesCS2D01G365300.2	Wheat	cytosol	59.64	53.41
HORVU2Hr1G091830.4	Barley	cytosol	59.64	53.41
KXG31128	Sorghum	cytosol	51.12	50.67
Zm00001d017390_P001	Maize	cytosol	51.12	50.67
TraesCS6D01G220300.1	Wheat	cytosol	51.57	50.44
GSMUA_Achr8P11120_001	Banana	cytosol	63.23	50.36
Zm00001d051288_P001	Maize	cytosol	50.67	50.22
TraesCS6B01G266100.1	Wheat	cytosol, golgi, plasma membrane	51.12	50.0
TraesCS6A01G237600.1	Wheat	cytosol, golgi, plasma membrane	51.12	50.0
HORVU6Hr1G060760.3	Barley	cytosol, golgi, plasma membrane	50.67	49.56
PGSC0003DMT400076826	Potato	cytosol	13.0	48.33
GSMUA_Achr11P...	Banana	cytosol	42.15	47.0
HORVU7Hr1G071270.2	Barley	mitochondrion	61.44	46.44
Os02t0643000-01	Rice	plasma membrane	51.57	44.4
Bra022110.1-P	Field mustard	cytosol	43.05	44.04
Zm00001d025939_P003	Maize	cytosol, golgi, plasma membrane	58.3	43.62
Bra024958.1-P	Field mustard	cytosol	42.6	43.58
Bra022111.1-P	Field mustard	cytosol	42.15	42.73
Bra017499.1-P	Field mustard	cytosol	41.26	41.82
Zm00001d036342_P001	Maize	cytosol	40.81	36.4
Bra031641.1-P	Field mustard	cytosol	43.5	28.28
Bra018597.1-P	Field mustard	cytosol	44.39	26.68
Bra030744.1-P	Field mustard	cytosol	41.7	23.66

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	EnsemblPlantsGene:Bra003313	EnsemblPlants:Bra003313.1	EnsemblPlants:Bra003313.1-P	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M4CGI0
InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF94
InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI0002541624	InterPro:VAP	SEG:seg

Description

AT2G45140 (E=3e-079) PVA12 | PVA12 (PLANT VAP HOMOLOG 12); structural molecule

Coordinates

chrA07:-:12553740..12555862

Molecular Weight (calculated)

24684.8 Da

IEP (calculated)

8.774

GRAVY (calculated)

-0.360

Length

223 amino acids

Sequence
(BLAST)

001: MSNELLDIDP IDLQFPFELK KQISSSLYLA NKTDDYVAFK VKTTNPKKYC VRPNTGVVLP RSSSEVLVTM QAQKEAPADM QCKDKFLLQC VVASPGATAK
101: DVTPEMFSKE AGHRVEETKL RVVYVDPPQP PSPVREGSEE GSSPRASVSD SANVSDFTTA RALITRLTEE KKSALQLNKK LQQELEQLKR ESKRSQSGGG
201: IPFMYVLLVG LIGLILGYIM TRT

Best Arabidopsis Sequence Match ( AT2G45140.2 )
(BLAST)

001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA RALVTKLTEE KNSAVQLNNR LQQELDQLRR ESKRSKSGGI
201: PFMYVLLVGL IGLILGYIMK RT

Arabidopsis Description

PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.