Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- golgi 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
mitochondrion: 27297264 plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14570 | Sorghum | cytosol, nucleus, plasma membrane | 93.44 | 93.44 |
| TraesCS7D01G296400.1 | Wheat | cytosol | 85.66 | 86.01 |
| TraesCS7A01G300700.1 | Wheat | cytosol | 85.25 | 85.6 |
| Os08t0156700-01 | Rice | plasma membrane | 84.43 | 84.77 |
| HORVU7Hr1G071270.2 | Barley | mitochondrion | 84.43 | 69.83 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 64.75 | 66.11 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 64.34 | 65.69 |
| Solyc01g090910.2.1 | Tomato | nucleus | 62.7 | 65.67 |
| VIT_15s0048g00220.t01 | Wine grape | cytosol, nucleus, plasma membrane | 63.11 | 64.44 |
| KRH65384 | Soybean | cytosol | 63.52 | 64.32 |
| Bra040323.1-P | Field mustard | cytosol, golgi, plasma membrane | 62.3 | 63.6 |
| KRH76164 | Soybean | endoplasmic reticulum | 62.7 | 63.49 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 61.89 | 63.18 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 61.48 | 62.76 |
| AT2G45140.1 | Thale cress | cytosol | 61.48 | 62.76 |
| CDY48365 | Canola | cytosol | 61.48 | 62.76 |
| CDX89063 | Canola | cytosol, golgi, plasma membrane | 61.07 | 62.34 |
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 61.48 | 62.24 |
| CDX71796 | Canola | cytosol | 60.66 | 62.18 |
| Bra014481.1-P | Field mustard | cytosol, golgi, plasma membrane | 60.66 | 61.92 |
| Bra003313.1-P | Field mustard | cytosol | 56.56 | 61.88 |
| CDY41153 | Canola | cytosol | 60.25 | 61.76 |
| Bra007547.1-P | Field mustard | cytosol | 60.25 | 61.76 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 60.25 | 61.25 |
| Bra003423.1-P | Field mustard | cytosol, golgi, plasma membrane | 60.25 | 61.25 |
| CDY56247 | Canola | cytosol | 59.84 | 60.83 |
| CDY57247 | Canola | cytosol | 59.02 | 60.0 |
| CDX95631 | Canola | cytosol, golgi, plasma membrane | 59.02 | 59.75 |
| Solyc10g018350.1.1 | Tomato | cytosol | 58.2 | 59.66 |
| Zm00001d051288_P001 | Maize | cytosol | 54.92 | 59.56 |
| AT3G60600.1 | Thale cress | cytosol | 61.07 | 58.2 |
| Zm00001d017390_P001 | Maize | cytosol | 53.28 | 57.78 |
| AT2G23830.1 | Thale cress | cytosol | 33.61 | 55.03 |
| Zm00001d024588_P001 | Maize | cytosol, extracellular, mitochondrion | 53.28 | 53.94 |
| PGSC0003DMT400066920 | Potato | cytosol | 58.2 | 53.18 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 60.66 | 52.86 |
| Zm00001d025939_P003 | Maize | cytosol, golgi, plasma membrane | 64.34 | 52.68 |
| GSMUA_Achr11P... | Banana | cytosol | 41.8 | 51.0 |
| PGSC0003DMT400055602 | Potato | cytosol, golgi, plasma membrane | 47.13 | 50.66 |
| Solyc06g034220.2.1 | Tomato | nucleus | 45.49 | 48.9 |
| Bra035442.1-P | Field mustard | cytosol | 20.49 | 46.3 |
| Zm00001d032507_P001 | Maize | cytosol, golgi, plasma membrane | 50.41 | 45.39 |
| PGSC0003DMT400076826 | Potato | cytosol | 10.25 | 41.67 |
| Zm00001d036342_P001 | Maize | cytosol | 40.98 | 40.0 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 16.39 | 39.22 |
| Zm00001d051383_P001 | Maize | cytosol, plastid | 41.39 | 38.4 |
| Zm00001d014260_P001 | Maize | plastid | 22.54 | 30.9 |
| Zm00001d051329_P002 | Maize | mitochondrion, plasma membrane, plastid | 35.25 | 28.48 |
| Zm00001d017448_P001 | Maize | endoplasmic reticulum, golgi, plastid | 34.84 | 27.42 |
| Zm00001d011904_P001 | Maize | cytosol | 43.44 | 27.11 |
| Zm00001d010495_P002 | Maize | cytosol | 40.57 | 26.05 |
| Zm00001d042180_P002 | Maize | cytosol | 42.21 | 25.69 |
| AT1G51270.3 | Thale cress | cytosol | 48.36 | 18.52 |
| Zm00001d048612_P001 | Maize | cytosol | 22.95 | 7.91 |
Protein Annotations
| EntrezGene:100191705 | Gene3D:2.60.40.10 | MapMan:20.7.1 | ProteinID:AQK50763.1 | UniProt:B4F9V2 | EMBL:BT033890 |
| ncoils:Coil | EMBL:EU966384 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000535 | InterPro:IPR013783 |
| InterPro:Ig-like_fold | InterPro:MSP_dom | PFAM:PF00635 | PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 |
| PANTHER:PTHR10809:SF94 | InterPro:PapD-like_sf | SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI00017B62FD | InterPro:VAP |
| EnsemblPlantsGene:Zm00001d049553 | EnsemblPlants:Zm00001d049553_P001 | EnsemblPlants:Zm00001d049553_T001 | SEG:seg | : | : |
Description
Vesicle-associated protein 1-1
Coordinates
chr4:+:34694524..34700206
Molecular Weight (calculated)
26763.2 Da
IEP (calculated)
8.039
GRAVY (calculated)
-0.391
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPAPATTG DLLRVDPLEL RFPFELKKQI SCSMQLSNHT DDYIAFKVKT TSPKKYSVRP NTGVVLPRST CDVVVTMQAQ REAPPDMQCK DKFLVQSVVA
101: PAGITVKDVT GDMFTKESGY KMEEVKLRVT YVAPPQPPSP VPEESEEGSP PRASESENGD GPSGGFTRAL RERIEPQDKS TEAGALVSKL TEEKNSAIQQ
201: NHRLRQELDL VRQEISKRRG GGFSFIVVII VALIGAILGY LMKS
101: PAGITVKDVT GDMFTKESGY KMEEVKLRVT YVAPPQPPSP VPEESEEGSP PRASESENGD GPSGGFTRAL RERIEPQDKS TEAGALVSKL TEEKNSAIQQ
201: NHRLRQELDL VRQEISKRRG GGFSFIVVII VALIGAILGY LMKS
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.