Factsheet for Zm00001d034346_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017390_P001
Zm00001d025939_P003
Zm00001d036342_P001
Zm00001d037747_P001
Zm00001d039455_P002
Zm00001d049553_P001
Zm00001d051288_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34690.1	Zm00001d037747_P001	AT1G55190.1	18845362
AT2G34690.1	Zm00001d039455_P002	AT1G55190.1	18845362
AT2G34690.1	Zm00001d037747_P001	AT3G13720.1	18845362
AT2G34690.1	Zm00001d039455_P002	AT3G13720.1	18845362
AT2G34690.1	Zm00001d017390_P001	AT3G60600.1	18845362
AT2G34690.1	Zm00001d025939_P003	AT3G60600.1	18845362
AT2G34690.1	Zm00001d036342_P001	AT3G60600.1	18845362
AT2G34690.1	Zm00001d049553_P001	AT3G60600.1	18845362
AT2G34690.1	Zm00001d051288_P001	AT3G60600.1	18845362

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90780	Sorghum	cytosol	76.36	95.63
TraesCS5A01G423200.1	Wheat	cytosol	67.83	84.95
Os03t0784900-01	Rice	cytosol	67.83	84.54
TraesCS5D01G431800.1	Wheat	cytosol	67.83	84.13
GSMUA_Achr5P02430_001	Banana	endoplasmic reticulum, extracellular	52.33	77.14
TraesCS5B01G425200.1	Wheat	cytosol	68.22	70.97
KRH11758	Soybean	cytosol	56.2	69.71
KRH36758	Soybean	cytosol	54.26	67.96
Bra022985.1-P	Field mustard	cytosol	38.37	66.89
AT2G34690.1	Thale cress	cytosol	53.1	66.5
PGSC0003DMT400054370	Potato	cytosol	52.71	64.76
Solyc02g070250.2.1	Tomato	cytosol	52.33	64.29
CDX79572	Canola	cytosol	51.16	64.08
CDX84635	Canola	cytosol, endoplasmic reticulum, peroxisome	50.39	63.11
HORVU5Hr1G103320.2	Barley	nucleus, plastid	69.38	61.72
VIT_10s0003g04580.t01	Wine grape	cytosol	48.84	61.46
CDX84289	Canola	cytosol	23.26	57.69
CDY43977	Canola	cytosol	26.74	54.76
CDX87716	Canola	cytosol	26.74	54.76
Bra022038.1-P	Field mustard	cytosol	39.53	51.78
CDX87706	Canola	cytosol	16.67	49.43
VIT_11s0052g00280.t01	Wine grape	cytosol	39.53	49.28
CDY43980	Canola	cytosol	38.37	49.25
Bra022041.1-P	Field mustard	cytosol	38.37	49.25
VIT_11s0052g00260.t01	Wine grape	cytosol, plastid	37.6	47.09
Zm00001d033718_P001	Maize	cytosol	39.92	43.83
CDX87707	Canola	cytosol	20.54	38.69
VIT_11s0052g00220.t01	Wine grape	cytosol	20.54	37.32
VIT_11s0052g00230.t01	Wine grape	cytosol	31.4	35.22
VIT_11s0052g00240.t01	Wine grape	cytosol	32.95	21.74

Protein Annotations

Gene3D:1.10.3520.10	MapMan:5.4.6	UniProt:A0A1D6L6S7	InterPro:GLTP_sf	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006950
GO:GO:0008150	GO:GO:0008219	GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009751
GO:GO:0009816	GO:GO:0009987	GO:GO:0010175	GO:GO:0015695	GO:GO:0015791	GO:GO:0016043
GO:GO:0072488	GO:GO:0120009	GO:GO:0120013	InterPro:Glycolipid_transfer_prot_dom	InterPro:IPR036497	ProteinID:ONM10001.1
PFAM:PF08718	PANTHER:PTHR10219	PANTHER:PTHR10219:SF28	SUPFAM:SSF110004	UniParc:UPI00022163FB	EnsemblPlantsGene:Zm00001d034346
EnsemblPlants:Zm00001d034346_P002	EnsemblPlants:Zm00001d034346_T002	:	:	:	:

Description

Accelerated cell death 11

Coordinates

chr1:-:290279672..290282656

Molecular Weight (calculated)

28414.4 Da

IEP (calculated)

10.423

GRAVY (calculated)

-0.245

Length

258 amino acids

Sequence
(BLAST)

001: MNALKHRKAS RQHQTFLLKI LQKNKKGEGK NSRLLPRACQ HPRSASSPKA AAMGSSQADK PLRRIAVSFE ELAAVAKQQP AVPMDAGAFS RACSNVSVLF
101: GCLGIAFKFA EMDYVAKVDD LVEASKSIST LPSMVERDIQ TDTVRKPGSH TRNLLRVKRG IDMVKVLFEQ ILVTEGNSLR DAASVAYAQV FAPHHGWAIR
201: KAVSAGMYAL PSKSQLLKKL NEDEESAKVQ MQNFVRSSAP VICYVDDLFT SRNLGIDW

Best Arabidopsis Sequence Match ( AT2G34690.1 )
(BLAST)

001: MADSEADKPL RKISAAFKKL AIIVNSPNPE VPVTQFSHAC SLVSPLFGCL GIAFKFAEMD YVAKVDDLVR ASSSISTLVV MMDKDIEADC VRKAGSHTRN
101: LLRVKRGLDM VKVLFEQIIA SEGDNSLKDP ATKSYAQVFA PHHGWAIRKA VSLGMYALPT RAHLLNMLKE DEAAAKIHMQ SYVNSSAPLI TYLDNLFLSK
201: QLGIDW

Arabidopsis Description

ACD11Accelerated cell death 11 [Source:UniProtKB/Swiss-Prot;Acc:O64587]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.