CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX89063
CDY08228
CDY24050
CDY26125
CDY33064
CDY37482
CDY41153
CDY48365
CDY51733
CDY51734
CDY55133

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34690.1	CDY08228	AT1G55190.1	18845362
AT2G34690.1	CDY24050	AT1G55190.1	18845362
AT2G34690.1	CDY26125	AT1G55190.1	18845362
AT2G34690.1	CDY33064	AT1G55190.1	18845362
AT2G34690.1	CDY37482	AT3G13720.1	18845362
AT2G34690.1	CDY51733	AT3G13720.1	18845362
AT2G34690.1	CDY51734	AT3G13720.1	18845362
AT2G34690.1	CDY55133	AT3G13720.1	18845362
AT2G34690.1	CDX67837	AT3G60600.1	18845362
AT2G34690.1	CDX71796	AT3G60600.1	18845362
AT2G34690.1	CDX89063	AT3G60600.1	18845362
AT2G34690.1	CDY41153	AT3G60600.1	18845362
AT2G34690.1	CDY48365	AT3G60600.1	18845362

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84635	Canola	cytosol, endoplasmic reticulum, peroxisome	92.23	92.23
AT2G34690.1	Thale cress	cytosol	84.47	84.47
CDX84289	Canola	cytosol	38.84	76.92
GSMUA_Achr5P02430_001	Banana	endoplasmic reticulum, extracellular	60.68	71.43
VIT_10s0003g04580.t01	Wine grape	cytosol	68.93	69.27
PGSC0003DMT400054370	Potato	cytosol	68.45	67.14
Solyc02g070250.2.1	Tomato	cytosol	68.45	67.14
KRH11758	Soybean	cytosol	67.48	66.83
KRH36758	Soybean	cytosol	66.5	66.5
EER90780	Sorghum	cytosol	64.56	64.56
TraesCS5A01G423200.1	Wheat	cytosol	63.11	63.11
TraesCS5D01G431800.1	Wheat	cytosol	63.11	62.5
Os03t0784900-01	Rice	cytosol	62.14	61.84
CDY43977	Canola	cytosol	36.89	60.32
CDX87716	Canola	cytosol	36.89	60.32
CDY43980	Canola	cytosol	53.88	55.22
CDX87706	Canola	cytosol	22.82	54.02
TraesCS5B01G425200.1	Wheat	cytosol	63.11	52.42
Zm00001d034346_P002	Maize	mitochondrion	64.08	51.16
CDX96005	Canola	cytosol	20.39	48.28
VIT_11s0052g00280.t01	Wine grape	cytosol	48.06	47.83
VIT_11s0052g00260.t01	Wine grape	cytosol, plastid	47.09	47.09
HORVU5Hr1G103320.2	Barley	nucleus, plastid	61.16	43.45
CDX87707	Canola	cytosol	27.67	41.61
CDY38602	Canola	cytosol	45.15	41.33
CDX90348	Canola	cytosol	43.69	39.82
CDY63450	Canola	cytosol	43.2	39.38
VIT_11s0052g00220.t01	Wine grape	cytosol	26.7	38.73
VIT_11s0052g00230.t01	Wine grape	cytosol	37.86	33.91
CDX96006	Canola	cytosol	17.48	27.07
VIT_11s0052g00240.t01	Wine grape	cytosol	37.38	19.69

Protein Annotations

Gene3D:1.10.3520.10	MapMan:5.4.6	GO:A0A078CS65	EnsemblPlants:CDX79572	ProteinID:CDX79572	ProteinID:CDX79572.1
InterPro:GLTP_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0120009
GO:GO:0120013	EnsemblPlantsGene:GSBRNA2T00132333001	InterPro:Glycolipid_transfer_prot_dom	InterPro:IPR036497	PFAM:PF08718	PANTHER:PTHR10219
PANTHER:PTHR10219:SF28	SUPFAM:SSF110004	UniParc:UPI0004EC41FA	:	:	:

Description

BnaC03g19080D

Coordinates

chrLK031818:+:870348..871912

Molecular Weight (calculated)

22459.2 Da

IEP (calculated)

7.437

GRAVY (calculated)

0.066

Length

206 amino acids

Sequence
(BLAST)

001: MADSNAERPL RKISTAFKEL AATVSSPSPE VPVAQFSQAC SLVSPLFGCL GIAFKFAEMD YVAKVEDLAK ASSSVSTLVV MMDKDIEANC VRKAGSHTRN
101: LLRVKRGLDM VRALFVEIIA SEGDNSLKDP ASKSYAQVFA PHHGWAIRKA VALGMYALPT RSQLLTMLNE EEAEAKIQMQ SYVNASAPVI AYLDNLFLSK
201: QLGIDW

Best Arabidopsis Sequence Match ( AT2G34690.1 )
(BLAST)

001: MADSEADKPL RKISAAFKKL AIIVNSPNPE VPVTQFSHAC SLVSPLFGCL GIAFKFAEMD YVAKVDDLVR ASSSISTLVV MMDKDIEADC VRKAGSHTRN
101: LLRVKRGLDM VKVLFEQIIA SEGDNSLKDP ATKSYAQVFA PHHGWAIRKA VSLGMYALPT RAHLLNMLKE DEAAAKIHMQ SYVNSSAPLI TYLDNLFLSK
201: QLGIDW

Arabidopsis Description

ACD11Accelerated cell death 11 [Source:UniProtKB/Swiss-Prot;Acc:O64587]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.