CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX89063
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39670.1	CDX67837	AT3G60600.1	18845362
AT4G39670.1	CDX71796	AT3G60600.1	18845362
AT4G39670.1	CDX89063	AT3G60600.1	18845362
AT4G39670.1	CDY41153	AT3G60600.1	18845362
AT4G39670.1	CDY48365	AT3G60600.1	18845362

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90348	Canola	cytosol	97.35	97.35
CDX96005	Canola	cytosol	34.96	90.8
AT4G39670.1	Thale cress	cytosol	83.19	82.1
CDY38602	Canola	cytosol	77.43	77.78
PGSC0003DMT400028452	Potato	cytosol	59.29	65.05
KRG90803	Soybean	cytosol	58.41	63.77
Solyc12g033130.1.1	Tomato	cytosol	57.96	63.59
KRH35966	Soybean	cytosol	58.85	63.03
VIT_01s0011g03390.t01	Wine grape	cytosol	57.08	60.85
GSMUA_Achr9P28440_001	Banana	cytosol	53.54	56.28
TraesCS4D01G045300.1	Wheat	cytosol	55.75	55.26
TraesCS4B01G045400.1	Wheat	cytosol	55.75	55.26
TraesCS4A01G268800.1	Wheat	cytosol	55.75	55.26
Os03t0710700-00	Rice	cytosol	54.42	53.02
EER91001	Sorghum	mitochondrion	54.87	52.99
Zm00001d033718_P001	Maize	cytosol	53.54	51.49
CDX96006	Canola	cytosol	29.65	50.38
CDX79572	Canola	cytosol	39.38	43.2
HORVU4Hr1G007360.7	Barley	cytosol	53.1	43.01
CDX84635	Canola	cytosol, endoplasmic reticulum, peroxisome	37.61	41.26
CDY43977	Canola	cytosol	21.68	38.89
CDX87716	Canola	cytosol	21.24	38.1
CDX84289	Canola	cytosol	16.81	36.54
CDX87706	Canola	cytosol	13.27	34.48
CDY43980	Canola	cytosol	30.09	33.83
CDX87707	Canola	cytosol	18.14	29.93

Protein Annotations

Gene3D:1.10.3520.10	MapMan:5.4.6	GO:A0A078JE77	UniProt:A0A078JE77	EnsemblPlants:CDY63450	ProteinID:CDY63450
ProteinID:CDY63450.1	InterPro:GLTP_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0120009	GO:GO:0120013	EnsemblPlantsGene:GSBRNA2T00039305001	InterPro:Glycolipid_transfer_prot_dom	InterPro:IPR036497	PFAM:PF08718
PANTHER:PTHR10219	PANTHER:PTHR10219:SF28	SUPFAM:SSF110004	UniParc:UPI0001CAB666	SEG:seg	:

Description

BnaC03g76350DBnaC03g76350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JE77]

Coordinates

chrLK034301:-:17629..18309

Molecular Weight (calculated)

25876.7 Da

IEP (calculated)

4.394

GRAVY (calculated)

-0.277

Length

226 amino acids

Sequence
(BLAST)

001: MEEEEEEGDT FEDAVCTKTP ARVNTPLSVI TEAFENLADL LKPDISTDED GLSLDAFCSA CTHVSILFSC LGFAFKFAEM EYISKVKDLV EASKTLDTLQ
101: NILDLDVEKE TVKTPGSRSR NLRRVRQGLD LIRAIFEQFL MTDEYSLKHA ATTAYTEVCA PFHTWAVRTA VYAGMYTLPT RDQLLLRLNE TDQSVEKNMR
201: RYMEASQPII EYIDKLYIER NIKLDW

Best Arabidopsis Sequence Match ( AT4G39670.1 )
(BLAST)

001: MEAEVEEEEE DMFEDAVCTT QARVNTPLSV ITEAFEDLAD LVKPQRSDEI DEDELRLDDF CSACTHVSVL FNCLGFAFKF AEMEYIAKVK DLVEASKTFE
101: TLHNILDLDV EKETVKTPGS HSRNLRRVRQ GLDLIRAIFE QFLIADDYSL KDAATTAYTE VCAPFHTWAV RTAVYAGMYT LPTRDQLLLR LNETDQSVEK
201: NMRRYMEASR PIIEYIDKLY IERNIKLDW

Arabidopsis Description

ACD11 homolog protein [Source:UniProtKB/Swiss-Prot;Acc:Q8L7U7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.