CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH65384
KRH76164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39670.1	KRH65384	AT3G60600.1	18845362
AT4G39670.1	KRH76164	AT3G60600.1	18845362

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90803	Soybean	cytosol	93.84	95.65
CDX96005	Canola	cytosol	30.33	73.56
PGSC0003DMT400028452	Potato	cytosol	63.51	65.05
VIT_01s0011g03390.t01	Wine grape	cytosol	64.93	64.62
Solyc12g033130.1.1	Tomato	cytosol	62.56	64.08
AT4G39670.1	Thale cress	cytosol	65.4	60.26
CDY38602	Canola	cytosol	63.03	59.11
Bra010670.1-P	Field mustard	cytosol	63.03	58.85
CDX90348	Canola	cytosol	63.03	58.85
CDY63450	Canola	cytosol	63.03	58.85
Bra033633.1-P	Field mustard	cytosol	62.56	58.15
GSMUA_Achr9P28440_001	Banana	cytosol	56.4	55.35
TraesCS4A01G268800.1	Wheat	cytosol	58.29	53.95
TraesCS4D01G045300.1	Wheat	cytosol	58.29	53.95
TraesCS4B01G045400.1	Wheat	cytosol	58.29	53.95
Bra004321.1-P	Field mustard	cytosol	63.51	52.76
Os03t0710700-00	Rice	cytosol	56.4	51.29
EER91001	Sorghum	mitochondrion	56.4	50.85
Zm00001d033718_P001	Maize	cytosol	55.45	49.79
KRH11758	Soybean	cytosol	47.87	48.56
KRH36758	Soybean	cytosol	46.92	48.06
HORVU4Hr1G007360.7	Barley	cytosol	56.4	42.65
CDX96006	Canola	cytosol	20.38	32.33

Protein Annotations

Gene3D:1.10.3520.10	EntrezGene:100818548	MapMan:5.4.6	EMBL:ACUP02006715	EMBL:BT097799	UniProt:C6TJF4
ncoils:Coil	InterPro:GLTP_sf	EnsemblPlantsGene:GLYMA_10G275200	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0120009	GO:GO:0120013	InterPro:Glycolipid_transfer_prot_dom	InterPro:IPR036497	EnsemblPlants:KRH35966
ProteinID:KRH35966	ProteinID:KRH35966.1	PFAM:PF08718	PANTHER:PTHR10219	PANTHER:PTHR10219:SF28	SUPFAM:SSF110004
UniParc:UPI00018C6803	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:49805464..49809485

Molecular Weight (calculated)

23776.7 Da

IEP (calculated)

7.341

GRAVY (calculated)

-0.125

Length

211 amino acids

Sequence
(BLAST)

001: MPEMDERVVI QQPLSAIAEA FEKLSKRVKE RNNGNDIRLD TFCEAASLVS VLFRSLGLAF KFAELEYVAK LHGLLEASKT CSTLPDILNL DVASDTVKTS
101: GSFSRNLRRV RQGLDLVRAI FEQLLSTDDS SLKEVASTAY GQVCAPYHTW AVKTAVYAGM YTLPTRDQLL MKLNETEQSA DKKMRRYIAA SLPIIEYIDK
201: LYLARNITLD W

Best Arabidopsis Sequence Match ( AT4G39670.1 )
(BLAST)

001: MEAEVEEEEE DMFEDAVCTT QARVNTPLSV ITEAFEDLAD LVKPQRSDEI DEDELRLDDF CSACTHVSVL FNCLGFAFKF AEMEYIAKVK DLVEASKTFE
101: TLHNILDLDV EKETVKTPGS HSRNLRRVRQ GLDLIRAIFE QFLIADDYSL KDAATTAYTE VCAPFHTWAV RTAVYAGMYT LPTRDQLLLR LNETDQSVEK
201: NMRRYMEASR PIIEYIDKLY IERNIKLDW

Arabidopsis Description

ACD11 homolog protein [Source:UniProtKB/Swiss-Prot;Acc:Q8L7U7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.